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  5. Transcript_contig_54624

Transcript_contig_54624 (54624)


Aliases : 54624

Description : PPM-type phosphatase domain [Interproscan].


Gene families : OG_01_0000226 (OrthoFinder) Phylogenetic Tree(s): OG0000226_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54624
Cluster HCCA: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
Cre06.g256300 30778923 Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz05g29190.t1 No alias PPM-type phosphatase domain [Interproscan]. 0.01 OrthoFinder
Dusal.0668s00007.1 33201574 PPM-type phosphatase domain [Interproscan]. 0.02 OrthoFinder
TP08G01350.1 No alias PPM-type phosphatase domain [Interproscan]. 0.01 OrthoFinder
UNPLg00340.t1 No alias PPM-type phosphatase domain [Interproscan]. 0.01 OrthoFinder
Vocar.0002s0627.1 32890632 PPM-type phosphatase domain [Interproscan]. 0.02 OrthoFinder
Vocar.0013s0054.1 32896348 PPM-type phosphatase domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57182.1_9191 PRW57182 Serine threonine phosphatase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
MF GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
CC GO:0031248 protein acetyltransferase complex IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1902493 acetyltransferase complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase_dom 180 394
No external refs found!