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  5. lcl|LHPG02000003.1_cds_PRW59601.1_6691

lcl|LHPG02000003.1_cds_PRW59601.1_6691 (PRW59601)


Aliases : PRW59601

Description : Actin


Gene families : OG_01_0000106 (OrthoFinder) Phylogenetic Tree(s): OG0000106_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000003.1_cds_PRW59601.1_6691
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001408.21 tig00001408_g8615.t1 Actin-related protein 6 OS=Oryza sativa subsp. indica 0.01 OrthoFinder
Cpa|evm.model.tig00020961.83 tig00020961_g16703.t1 Chromatin organisation.chromatin remodeling... 0.01 OrthoFinder
Cz05g19150.t1 No alias Actin family [Interproscan]. 0.05 OrthoFinder
Dusal.0005s00041.1 33196958 Actin family [Interproscan]. 0.05 OrthoFinder
Dusal.0175s00014.1 33199727 Actin family [Interproscan]. 0.02 OrthoFinder
EOD13905 No alias Actin family [Interproscan]. 0.02 OrthoFinder
EOD18610 No alias Actin family [Interproscan]. 0.02 OrthoFinder
EOD32708 No alias Actin family [Interproscan]. 0.02 OrthoFinder
OT_04G02610.1 No alias Actin family [Interproscan]. 0.05 OrthoFinder
Sro61_g034960.1 Contig3112.g24749 Actin-66 (Fragment) 0.01 OrthoFinder
SymbC1.scaffold10261.1 10261.1 Actin family [Interproscan]. 0.01 OrthoFinder
Transcript_contig_10957 10957 Actin family [Interproscan]. 0.01 OrthoFinder
XM_002503045.1 MICPUN_90942, 90942 Hypothetical protein (ACTIN) 0.02 OrthoFinder
lcl|BLLF01000050.1_cds_GFH06670.1_1147 HaLaN_01339, GFH06670 Actin family [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000700.1_cds_GFH14205.1_8682 HaLaN_10218, GFH14205 Actin family [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000824.1_cds_GFH15240.1_9717 HaLaN_11434, GFH15240 Actin 0.03 OrthoFinder
lcl|BLLF01004621.1_cds_GFH29966.1_24443 HaLaN_28726, GFH29966 Actin 0.02 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494051.1_3915 KAA8494051 Actin 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000271 polysaccharide biosynthetic process IEP Enrichment
MF GO:0000287 magnesium ion binding IEP Enrichment
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0003937 IMP cyclohydrolase activity IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0003997 acyl-CoA oxidase activity IEP Enrichment
MF GO:0004096 catalase activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004743 pyruvate kinase activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
MF GO:0005534 galactose binding IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006073 cellular glucan metabolic process IEP Enrichment
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Enrichment
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Enrichment
BP GO:0006090 pyruvate metabolic process IEP Enrichment
BP GO:0006091 generation of precursor metabolites and energy IEP Enrichment
BP GO:0006096 glycolytic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006635 fatty acid beta-oxidation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0006757 ATP generation from ADP IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0007275 multicellular organism development IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009062 fatty acid catabolic process IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009132 nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009150 purine ribonucleotide metabolic process IEP Enrichment
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009250 glucan biosynthetic process IEP Enrichment
BP GO:0009259 ribonucleotide metabolic process IEP Enrichment
BP GO:0009555 pollen development IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
BP GO:0016042 lipid catabolic process IEP Enrichment
BP GO:0016052 carbohydrate catabolic process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
BP GO:0019395 fatty acid oxidation IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
BP GO:0019693 ribose phosphate metabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
BP GO:0030258 lipid modification IEP Enrichment
BP GO:0030328 prenylcysteine catabolic process IEP Enrichment
BP GO:0030329 prenylcysteine metabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030955 potassium ion binding IEP Enrichment
MF GO:0031420 alkali metal ion binding IEP Enrichment
BP GO:0032501 multicellular organismal process IEP Enrichment
BP GO:0032502 developmental process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032787 monocarboxylic acid metabolic process IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0034440 lipid oxidation IEP Enrichment
MF GO:0035251 UDP-glucosyltransferase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0042219 cellular modified amino acid catabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044042 glucan metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044242 cellular lipid catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044264 cellular polysaccharide metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046031 ADP metabolic process IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046527 glucosyltransferase activity IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
BP GO:0046939 nucleotide phosphorylation IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
BP GO:0048229 gametophyte development IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0048856 anatomical structure development IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051273 beta-glucan metabolic process IEP Enrichment
BP GO:0051274 beta-glucan biosynthetic process IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
BP GO:0072329 monocarboxylic acid catabolic process IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR004000 Actin 6 377
No external refs found!