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  5. Dusal.0144s00018.1

Dusal.0144s00018.1 (33198197)


Aliases : 33198197

Description : tRNA methyltransferase, Trm1 [Interproscan].


Gene families : OG_01_0002502 (OrthoFinder) Phylogenetic Tree(s): OG0002502_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dusal.0144s00018.1
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021168.21 tig00021168_g19088.t1 RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder
Cre10.g422000 30790663 RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder
Sro2_g001870.2 No alias tRNA methyltransferase, Trm1 [Interproscan]. 0.02 OrthoFinder
Vocar.0019s0179.1 32892771 tRNA methyltransferase, Trm1 [Interproscan]. 0.03 OrthoFinder
XM_002506107.1 MICPUN_98316, 98316 tRNA methyltransferase, Trm1 [Interproscan]. 0.04 OrthoFinder
XM_003056694.1 MicpuC2_56104, 56104 tRNA methyltransferase, Trm1 [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01001104.1_cds_GFH17151.1_11628 HaLaN_13716, GFH17151 TRNA (guanine(26)-N(2))-dimethyltransferase 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58454.1_7789 PRW58454 TRNA (guanine(26)-N(2))-dimethyltransferase 2 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEA Interproscan
BP GO:0008033 tRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
CC GO:0000176 nuclear exosome (RNase complex) IEP Enrichment
CC GO:0000178 exosome (RNase complex) IEP Enrichment
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
MF GO:0000339 RNA cap binding IEP Enrichment
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Enrichment
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0019104 DNA N-glycosylase activity IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
BP GO:0034227 tRNA thio-modification IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
CC GO:1905354 exoribonuclease complex IEP Enrichment
InterPro domains Description Start Stop
IPR002905 Trm1 18 324
IPR002905 Trm1 325 379
No external refs found!