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  5. SymbC1.scaffold70.71

SymbC1.scaffold70.71 (70.71)


Aliases : 70.71

Description : Transport-associated OB, type 2; ABC transporter-like; Domain of unknown function DUF218 [Interproscan].


Gene families : OG_01_0000256 (OrthoFinder) Phylogenetic Tree(s): OG0000256_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold70.71
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold109.102 109.102 ABC transporter-like; ABC transporter type 1,... 0.05 OrthoFinder
SymbC1.scaffold109.3 109.3 ABC transporter-like; ABC transporter type 1,... 0.05 OrthoFinder
SymbC1.scaffold109.44 109.44 Bacterial extracellular solute-binding protein [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold2.1209 2.1209 Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl... 0.03 OrthoFinder
SymbC1.scaffold70.37 70.37 ABC transporter-like; Bacterial extracellular... 0.03 OrthoFinder
SymbC1.scaffold73.50 73.50 ABC transporter-like; ABC transporter type 1,... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000150 DNA strand exchange activity IEP Enrichment
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004478 methionine adenosyltransferase activity IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0004807 triose-phosphate isomerase activity IEP Enrichment
MF GO:0004834 tryptophan synthase activity IEP Enrichment
MF GO:0005539 glycosaminoglycan binding IEP Enrichment
BP GO:0006063 uronic acid metabolic process IEP Enrichment
BP GO:0006064 glucuronate catabolic process IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006528 asparagine metabolic process IEP Enrichment
BP GO:0006529 asparagine biosynthetic process IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Enrichment
BP GO:0006568 tryptophan metabolic process IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006586 indolalkylamine metabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
MF GO:0008144 drug binding IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008320 protein transmembrane transporter activity IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
BP GO:0008654 phospholipid biosynthetic process IEP Enrichment
MF GO:0008658 penicillin binding IEP Enrichment
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Enrichment
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Enrichment
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP Enrichment
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Enrichment
MF GO:0008882 [glutamate-ammonia-ligase] adenylyltransferase activity IEP Enrichment
MF GO:0008927 mannonate dehydratase activity IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0016987 sigma factor activity IEP Enrichment
BP GO:0017013 protein flavinylation IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
MF GO:0019213 deacetylase activity IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019585 glucuronate metabolic process IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0022884 macromolecule transmembrane transporter activity IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
BP GO:0030258 lipid modification IEP Enrichment
BP GO:0030259 lipid glycosylation IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
MF GO:0033293 monocarboxylic acid binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0042430 indole-containing compound metabolic process IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
MF GO:0042834 peptidoglycan binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
BP GO:0046500 S-adenosylmethionine metabolic process IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0048038 quinone binding IEP Enrichment
MF GO:0050043 lactate racemase activity IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0051301 cell division IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051920 peroxiredoxin activity IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0072329 monocarboxylic acid catabolic process IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
MF GO:0140318 protein transporter activity IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR003848 DUF218 69 232
IPR013611 Transp-assoc_OB_typ2 905 982
IPR003439 ABC_transporter-like_ATP-bd 663 798
No external refs found!