SymbC1.scaffold70.21 (70.21)


Aliases : 70.21

Description : Inositol monophosphatase-like; RNA polymerase sigma factor 54 interaction domain; GTPase HflX, N-terminal; RNA-binding protein Hfq; PAS fold; DNA binding HTH domain, Fis-type; HAMP domain; Regulator of K+ conductance, C-terminal; Signal transduction histidine kinase, dimerisation/phosphoacceptor domain; GTP-binding protein, middle domain; Aminotransferase class IV; Signal transduction response regulator, receiver domain; 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain; GTP binding domain; Histidine kinase/HSP90-like ATPase; 6-phosphogluconate dehydrogenase, NADP-binding; Regulator of K+ conductance, N-terminal [Interproscan].


Gene families : OG_01_0000962 (OrthoFinder) Phylogenetic Tree(s): OG0000962_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold70.21
Cluster HCCA: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021135.19 tig00021135_g18940.t1 GTP-binding protein At3g49725, chloroplastic... 0.01 OrthoFinder
Cz15g01090.t1 No alias GTP-binding protein, middle domain; GTP binding domain;... 0.01 OrthoFinder
Sro140_g065500.1 Contig1537.g13966 GTPase HflX 0.02 OrthoFinder
SymbC1.scaffold23.275 23.275 MaoC-like dehydratase domain; GTP-binding protein,... 0.02 OrthoFinder
lcl|BLLF01000537.1_cds_GFH12759.1_7236 HaLaN_08503, GFH12759 Hflx-type G domain-containing protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0006813 potassium ion transport IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
MF GO:0008134 transcription factor binding IEA Interproscan
MF GO:0008324 cation transmembrane transporter activity IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
BP GO:0046855 inositol phosphate dephosphorylation IEA Interproscan
MF GO:0050661 NADP binding IEA Interproscan
MF GO:0051287 NAD binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0004061 arylformamidase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004418 hydroxymethylbilane synthase activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006568 tryptophan metabolic process IEP Enrichment
BP GO:0006569 tryptophan catabolic process IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006586 indolalkylamine metabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
BP GO:0008653 lipopolysaccharide metabolic process IEP Enrichment
BP GO:0008654 phospholipid biosynthetic process IEP Enrichment
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Enrichment
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Enrichment
MF GO:0008883 glutamyl-tRNA reductase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009063 cellular amino acid catabolic process IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009074 aromatic amino acid family catabolic process IEP Enrichment
BP GO:0009103 lipopolysaccharide biosynthetic process IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
BP GO:0009310 amine catabolic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
MF GO:0019213 deacetylase activity IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
BP GO:0019441 tryptophan catabolic process to kynurenine IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042180 cellular ketone metabolic process IEP Enrichment
BP GO:0042402 cellular biogenic amine catabolic process IEP Enrichment
BP GO:0042430 indole-containing compound metabolic process IEP Enrichment
BP GO:0042436 indole-containing compound catabolic process IEP Enrichment
BP GO:0042537 benzene-containing compound metabolic process IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0044264 cellular polysaccharide metabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046218 indolalkylamine catabolic process IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
BP GO:0051301 cell division IEP Enrichment
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Enrichment
BP GO:0070189 kynurenine metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1901606 alpha-amino acid catabolic process IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR002197 HTH_Fis 431 471
IPR002197 HTH_Fis 1632 1670
IPR029154 NADP-bd 3240 3327
IPR003661 HisK_dim/P 1008 1071
IPR032305 GTP-bd_M 2540 2619
IPR006115 6PGDH_NADP-bd 3078 3237
IPR006073 GTP-bd 2627 2748
IPR006037 RCK_C 2053 2119
IPR001789 Sig_transdc_resp-reg_receiver 1229 1331
IPR001789 Sig_transdc_resp-reg_receiver 6 115
IPR003148 RCK_N 1904 2022
IPR003148 RCK_N 1679 1794
IPR000760 Inositol_monophosphatase-like 2834 3047
IPR025121 GTPase_HflX_N 2452 2537
IPR003660 HAMP_dom 816 868
IPR005001 Hfq 2369 2413
IPR001544 Aminotrans_IV 2129 2352
IPR003594 HATPase_C 1115 1223
IPR013767 PAS_fold 888 992
IPR002078 Sigma_54_int 1358 1526
IPR002078 Sigma_54_int 140 306
No external refs found!