Cz12g05190.t1

Description : Archaeal/bacterial/fungal rhodopsins; Sterile alpha motif domain; Adenylyl cyclase class-3/4/guanylyl cyclase; Signal transduction response regulator, receiver domain; Histidine kinase/HSP90-like ATPase; Signal transduction histidine kinase, dimerisation/phosphoacceptor domain [Interproscan].

Gene families : OG_01_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz12g05190.t1
Cluster	HCCA: Cluster_39

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000042.59	tig00000254_g22474.t1	Ethylene receptor 1 OS=Brassica oleracea	0.01	OrthoFinder
Cpa\|evm.model.tig00000158.13	tig00000158_g10126.t1	External stimuli response.light.red/far red light.PHY...	0.03	OrthoFinder
Cpa\|evm.model.tig00001215.7	tig00001215_g7570.t1	Histidine kinase 2 OS=Arabidopsis thaliana	0.01	OrthoFinder
Cpa\|evm.model.tig00020616.22	tig00020616_g12258.t1	Probable histidine kinase 3 OS=Oryza sativa subsp. indica	0.01	OrthoFinder
Cpa\|evm.model.tig00021179.53	tig00021179_g19270.t1	Probable histidine kinase 5 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder
Cre01.g038050	30788425	No description available	0.02	OrthoFinder
Cre11.g467678	30775629, COP6	Histidine kinase 5 OS=Arabidopsis thaliana	0.02	OrthoFinder
Dusal.0121s00015.1	33195087	Archaeal/bacterial/fungal rhodopsins; Histidine...	0.02	OrthoFinder
Dusal.0198s00010.1	33192678	Signal transduction response regulator, receiver domain;...	0.03	OrthoFinder
Dusal.0365s00004.1	33194892	Signal transduction response regulator, receiver domain...	0.02	OrthoFinder
OT_01G06340.1	No alias	Signal transduction response regulator, receiver domain...	0.02	OrthoFinder
PTI_18G01300.1	No alias	Histidine kinase/HSP90-like ATPase [Interproscan].	0.02	OrthoFinder
PTI_22G00210.1	No alias	PAS fold-4; Signal transduction histidine kinase,...	0.03	OrthoFinder
TP22G01730.1	No alias	Signal transduction response regulator, receiver domain...	0.01	OrthoFinder
Transcript_contig_89432	89432	Archaeal/bacterial/fungal rhodopsins; Histidine...	0.02	OrthoFinder
lcl\|BLLF01000561.1_cds_GFH12981.1_7458	HaLaN_08775, GFH12981	Signal transduction histidine kinase,...	0.02	OrthoFinder
lcl\|BLLF01000625.1_cds_GFH13551.1_8028	HaLaN_09455, GFH13551	Signal transduction histidine kinase,...	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEA	Interproscan
BP	GO:0000160	phosphorelay signal transduction system	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	None	Extended
MF	GO:0004673	protein histidine kinase activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	IEA	Interproscan
BP	GO:0007165	signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009187	cyclic nucleotide metabolic process	None	Extended
BP	GO:0009190	cyclic nucleotide biosynthetic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016301	kinase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0035556	intracellular signal transduction	IEA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140299	small molecule sensor activity	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Enrichment
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Enrichment
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Enrichment
MF	GO:0004402	histone acetyltransferase activity	IEP	Enrichment
MF	GO:0005543	phospholipid binding	IEP	Enrichment
BP	GO:0006473	protein acetylation	IEP	Enrichment
BP	GO:0006475	internal protein amino acid acetylation	IEP	Enrichment
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	Enrichment
MF	GO:0008270	zinc ion binding	IEP	Enrichment
BP	GO:0009966	regulation of signal transduction	IEP	Enrichment
BP	GO:0010646	regulation of cell communication	IEP	Enrichment
BP	GO:0016569	covalent chromatin modification	IEP	Enrichment
BP	GO:0016570	histone modification	IEP	Enrichment
BP	GO:0016573	histone acetylation	IEP	Enrichment
BP	GO:0017038	protein import	IEP	Enrichment
MF	GO:0017069	snRNA binding	IEP	Enrichment
MF	GO:0017070	U6 snRNA binding	IEP	Enrichment
BP	GO:0018205	peptidyl-lysine modification	IEP	Enrichment
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Enrichment
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Enrichment
BP	GO:0023051	regulation of signaling	IEP	Enrichment
MF	GO:0030623	U5 snRNA binding	IEP	Enrichment
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Enrichment
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Enrichment
MF	GO:0035091	phosphatidylinositol binding	IEP	Enrichment
BP	GO:0043543	protein acylation	IEP	Enrichment
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment
BP	GO:0048583	regulation of response to stimulus	IEP	Enrichment
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Enrichment
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Enrichment
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001660	SAM	1465	1516
IPR001054	A/G_cyclase	1076	1258
IPR001425	Arc/bac/fun_rhodopsins	32	183
IPR003594	HATPase_C	360	472
IPR003661	HisK_dim/P	251	317
IPR001789	Sig_transdc_resp-reg_receiver	914	1027

External Links

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Cz12g05190.t1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation