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  5. Cz02g00060.t1

Cz02g00060.t1


Description : Polymerase, nucleotidyl transferase domain; PAP/25A-associated [Interproscan].


Gene families : OG_01_0000397 (OrthoFinder) Phylogenetic Tree(s): OG0000397_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz02g00060.t1
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
EOD20401 No alias Polymerase, nucleotidyl transferase domain [Interproscan]. 0.02 OrthoFinder
PTI_12G01420.1 No alias PAP/25A-associated; Polymerase, nucleotidyl transferase... 0.02 OrthoFinder
Vocar.0001s0135.1 32884472 Polymerase, nucleotidyl transferase domain [Interproscan]. 0.02 OrthoFinder
Vocar.0008s0346.1 32897458 Polymerase, nucleotidyl transferase domain [Interproscan]. 0.02 OrthoFinder
XM_003057869.1 MicpuC2_47167, 47167 PAP/25A-associated; Polymerase, nucleotidyl transferase... 0.02 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44364.1_2309 PRW44364 Poly(A) RNA polymerase 2 0.03 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491094.1_9851 KAA8491094 Non-canonical poly(A) RNA polymerase protein Trf4-1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006817 phosphate ion transport IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015276 ligand-gated ion channel activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0022834 ligand-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
InterPro domains Description Start Stop
IPR002934 Polymerase_NTP_transf_dom 218 273
IPR002058 PAP_assoc 390 448
No external refs found!