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  5. Cpa|evm.model.tig00000852.39

Cpa|evm.model.tig00000852.39 (tig00000852_g5050.t1)


Aliases : tig00000852_g5050.t1

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP4/PCN assembly factor


Gene families : OG_01_0003140 (OrthoFinder) Phylogenetic Tree(s): OG0003140_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000852.39
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre13.g606850 30784338 Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder
Cz05g19220.t1 No alias WD40 repeat [Interproscan]. 0.07 OrthoFinder
Dusal.1403s00002.1 33199971 WD40 repeat [Interproscan]. 0.03 OrthoFinder
EOD21310 No alias Hypothetical protein [Ensembl]. 0.05 OrthoFinder
EOD27407 No alias WD40 repeat [Interproscan]. 0.07 OrthoFinder
OT_04G04050.1 No alias WD40 repeat [Interproscan]. 0.05 OrthoFinder
PTI_03G06630.1 No alias WD40 repeat [Interproscan]. 0.04 OrthoFinder
Sro26_g017510.1 Contig2432.g19922 RNA-associated protein 4 homolog 0.11 OrthoFinder
TP01G10340.1 No alias Hypothetical protein 0.02 OrthoFinder
Transcript_contig_57546 57546 WD40 repeat [Interproscan]. 0.09 OrthoFinder
Vocar.0043s0033.1 32886908 Hypothetical protein 0.05 OrthoFinder
XM_002505872.1 MICPUN_104036, 104036 WD40 repeat [Interproscan]. 0.08 OrthoFinder
XM_003057188.1 MicpuC2_46667, 46667 WD40 repeat [Interproscan]. 0.07 OrthoFinder
lcl|BLLF01001930.1_cds_GFH21916.1_16393 HaLaN_19299, GFH21916 WD_REPEATS_REGION domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61122.1_641 PRW61122 WD40 repeat 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004512 inositol-3-phosphate synthase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006020 inositol metabolic process IEP Enrichment
BP GO:0006021 inositol biosynthetic process IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 164 188
IPR001680 WD40_repeat 18 50
IPR001680 WD40_repeat 118 143
No external refs found!