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  5. Transcript_contig_67533

Transcript_contig_67533 (67533)


Aliases : 67533

Description : ABC transporter-like [Interproscan].


Gene families : OG_01_0000325 (OrthoFinder) Phylogenetic Tree(s): OG0000325_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_67533
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021126.3 tig00021126_g18456.t1 ABC transporter B family member 24, mitochondrial... 0.02 OrthoFinder
Cre10.g443000 30790283, ATM3 Solute transport.primary active transport.ABC... 0.02 OrthoFinder
Cre13.g604150 30784514 ABC transporter B family member 25, mitochondrial... 0.03 OrthoFinder
Dusal.0084s00030.1 33201452 ABC transporter-like; ABC transporter type 1,... 0.03 OrthoFinder
Dusal.0888s00004.1 33188562 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
OT_13G00820.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
PTI_16G02670.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
XM_002506000.1 MICPUN_88315, 88315 ATP-binding cassette superfamily 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499548.1_8501 KAA8499548 ATP-binding cassette sub-family B member 6, mitochondrial 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006359 regulation of transcription by RNA polymerase III IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
BP GO:0016480 negative regulation of transcription by RNA polymerase III IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022853 active ion transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051253 negative regulation of RNA metabolic process IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 208 357
No external refs found!