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  5. Transcript_contig_58809

Transcript_contig_58809 (58809)


Aliases : 58809

Description : Replication factor-A protein 1, N-terminal; OB-fold nucleic acid binding domain, AA-tRNA synthetase-type; Replication protein A, OB domain [Interproscan].


Gene families : OG_01_0000974 (OrthoFinder) Phylogenetic Tree(s): OG0000974_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_58809
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000823.19 tig00000823_g4546.t1 Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.02 OrthoFinder
Cre16.g651000 30777595 Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.01 OrthoFinder
Dusal.0019s00033.1 33192542 Domain of unknown function DUF223; Replication factor-A... 0.01 OrthoFinder
Dusal.0019s00034.1 33192532 Replication factor A, C-terminal [Interproscan]. 0.01 OrthoFinder
EOD05089 No alias Replication factor-A protein 1, N-terminal; Replication... 0.02 OrthoFinder
EOD40586 No alias Replication factor-A protein 1, N-terminal; Replication... 0.02 OrthoFinder
OT_15G01170.1 No alias Replication factor-A protein 1, N-terminal; Zinc finger,... 0.02 OrthoFinder
OT_18G01480.1 No alias Replication factor A, C-terminal; Replication protein A,... 0.02 OrthoFinder
Sro773_g200410.1 Contig1379.g12684 Replication protein A 70 kDa DNA-binding subunit 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59082.1_7003 PRW59082 Replication A 70 kDa DNA-binding subunit A-like 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005375 copper ion transmembrane transporter activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006333 chromatin assembly or disassembly IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0006825 copper ion transport IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022853 active ion transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0035434 copper ion transmembrane transport IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
MF GO:0046873 metal ion transmembrane transporter activity IEP Enrichment
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR007199 Rep_factor-A_N 6 103
IPR031657 REPA_OB_2 351 454
IPR004365 NA-bd_OB_tRNA 241 326
No external refs found!