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Transcript_contig_55440 (55440)


Aliases : 55440

Description : Helicase domain; tRNA(Met) cytidine acetyltransferase TmcA, N-terminal; Possible tRNA binding domain; GNAT domain [Interproscan].


Gene families : OG_01_0002421 (OrthoFinder) Phylogenetic Tree(s): OG0002421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55440
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Cre03.g192850 30786830 RNA cytidine acetyltransferase 1 OS=Arabidopsis thaliana 0.11 OrthoFinder
Cz01g03250.t1 No alias tRNA(Met) cytidine acetyltransferase TmcA, N-terminal;... 0.06 OrthoFinder
Cz01g03260.t1 No alias GNAT domain; Possible tRNA binding domain [Interproscan]. 0.06 OrthoFinder
EOD28649 No alias tRNA(Met) cytidine acetyltransferase TmcA, N-terminal;... 0.04 OrthoFinder
EOD35490 No alias tRNA(Met) cytidine acetyltransferase TmcA, N-terminal;... 0.01 OrthoFinder
OT_05G03510.1 No alias GNAT domain; Helicase domain; tRNA(Met) cytidine... 0.04 OrthoFinder
PTI_10G02560.1 No alias tRNA(Met) cytidine acetyltransferase TmcA, N-terminal;... 0.06 OrthoFinder
Sro2015_g311050.1 Contig3461.g26850 RNA cytidine acetyltransferase 0.12 OrthoFinder
TP06G00170.1 No alias GNAT domain; Helicase domain; tRNA(Met) cytidine... 0.04 OrthoFinder
Vocar.0035s0085.1 32896835 Possible tRNA binding domain; tRNA(Met) cytidine... 0.02 OrthoFinder
XM_003056788.1 MicpuC2_56289, 56289 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal;... 0.02 OrthoFinder
lcl|BLLF01005750.1_cds_GFH31589.1_26066 HaLaN_30661, GFH31589 18S rRNA cytosine acetyltransferase 0.03 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57974.1_8452 PRW57974 N-acetyltransferase 10 0.07 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492217.1_5400 KAA8492217 RNA cytidine acetyltransferase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008080 N-acetyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR013562 TmcA_N 106 200
IPR007807 Helicase_dom 286 492
IPR000182 GNAT_dom 533 770
IPR027992 tRNA_bind_dom 780 994
No external refs found!