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  5. lcl|LHPG02000010.1_cds_PRW51102.1_1065

lcl|LHPG02000010.1_cds_PRW51102.1_1065 (PRW51102)


Aliases : PRW51102

Description : ATP-dependent zinc metalloprotease FTSH chloroplastic isoform B


Gene families : OG_01_0000075 (OrthoFinder) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000010.1_cds_PRW51102.1_1065
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.42 tig00022075_g23603.t1 ATP-dependent zinc metalloprotease FTSH, chloroplastic... 0.02 OrthoFinder
Cre07.g352350 30774541 ATP-dependent zinc metalloprotease FTSH, chloroplastic... 0.03 OrthoFinder
Cz05g27050.t1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.02 OrthoFinder
Cz13g18040.t1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.02 OrthoFinder
EOD15728 No alias ATP-dependent metalloprotease FtsH [Ensembl]. 0.02 OrthoFinder
OT_08G02770.1 No alias Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.02 OrthoFinder
OT_11G02060.1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.03 OrthoFinder
Sro1141_g245690.1 Contig1502.g13746 Zinc metalloprotease FTSH, chloroplastic 0.02 OrthoFinder
Sro21_g014710.1 Contig813.g9061 Zinc metalloprotease FTSH, chloroplastic 0.02 OrthoFinder
Vocar.0004s0172.1 32889955 Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.02 OrthoFinder
Vocar.0005s0095.1 32884072 Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.03 OrthoFinder
Vocar.0028s0163.1 32895585 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003951 NAD+ kinase activity IEA Interproscan
MF GO:0004222 metalloendopeptidase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
BP GO:0006741 NADP biosynthetic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004555 alpha,alpha-trehalase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015927 trehalase activity IEP Enrichment
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0019207 kinase regulator activity IEP Enrichment
MF GO:0019887 protein kinase regulator activity IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 533 576
IPR003959 ATPase_AAA_core 373 508
IPR000642 Peptidase_M41 593 796
IPR002504 NADK 869 1154
No external refs found!