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  5. lcl|LHPG02000007.1_cds_PRW57071.1_9110

lcl|LHPG02000007.1_cds_PRW57071.1_9110 (PRW57071)


Aliases : PRW57071

Description : Serine threonine-kinase ATM isoform X2


Gene families : OG_01_0000135 (OrthoFinder) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000007.1_cds_PRW57071.1_9110
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cre09.g397327 30781509 No description available 0.03 OrthoFinder
Cre13.g572050 30784348 Protein modification.phosphorylation.atypical kinase... 0.02 OrthoFinder
Cz08g18200.t1 No alias Serine/threonine-protein kinase SMG1;... 0.02 OrthoFinder
Dusal.0381s00002.1 33189371 Hypothetical protein 0.03 OrthoFinder
OT_01G05300.1 No alias FKBP12-rapamycin binding domain; Domain of unknown... 0.02 OrthoFinder
lcl|BLLF01003748.1_cds_GFH28113.1_22590 HaLaN_26550, GFH28113 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495682.1_1680 KAA8495682 Serine/threonine-protein kinase ATR 0.02 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491164.1_5792 KAA8491164 Target of rapamycin 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0000469 cleavage involved in rRNA processing IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0003997 acyl-CoA oxidase activity IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005777 peroxisome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
BP GO:0006635 fatty acid beta-oxidation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006906 vesicle fusion IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007030 Golgi organization IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008198 ferrous iron binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009062 fatty acid catabolic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016042 lipid catabolic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016050 vesicle organization IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Enrichment
BP GO:0019395 fatty acid oxidation IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
BP GO:0030258 lipid modification IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0034440 lipid oxidation IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
CC GO:0042579 microbody IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044242 cellular lipid catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0044282 small molecule catabolic process IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Enrichment
BP GO:0048284 organelle fusion IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0061025 membrane fusion IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072329 monocarboxylic acid catabolic process IEP Enrichment
BP GO:0090174 organelle membrane fusion IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Enrichment
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000403 PI3/4_kinase_cat_dom 2862 3111
IPR003152 FATC_dom 3181 3208
IPR021668 TAN 8 155
No external refs found!