Aliases : PRW60528
Description : Putative ribosome-binding factor chloroplastic
Gene families : OG_01_0006248 (OrthoFinder) Phylogenetic Tree(s): OG0006248_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: lcl|LHPG02000002.1_cds_PRW60528.1_4400 | |
Cluster | HCCA: Cluster_25 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cre02.g145000 | 30786169 | Probable ribosome-binding factor A, chloroplastic... | 0.06 | OrthoFinder | |
Dusal.0090s00006.1 | 33189963 | Ribosome-binding factor A [Interproscan]. | 0.02 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006364 | rRNA processing | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000213 | tRNA-intron endonuclease activity | IEP | Enrichment |
BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Enrichment |
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Enrichment |
BP | GO:0001510 | RNA methylation | IEP | Enrichment |
MF | GO:0003674 | molecular_function | IEP | Enrichment |
MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
MF | GO:0004107 | chorismate synthase activity | IEP | Enrichment |
MF | GO:0004252 | serine-type endopeptidase activity | IEP | Enrichment |
MF | GO:0004518 | nuclease activity | IEP | Enrichment |
MF | GO:0004549 | tRNA-specific ribonuclease activity | IEP | Enrichment |
MF | GO:0004674 | protein serine/threonine kinase activity | IEP | Enrichment |
MF | GO:0005488 | binding | IEP | Enrichment |
MF | GO:0005515 | protein binding | IEP | Enrichment |
CC | GO:0005730 | nucleolus | IEP | Enrichment |
BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Enrichment |
BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
BP | GO:0006400 | tRNA modification | IEP | Enrichment |
BP | GO:0008033 | tRNA processing | IEP | Enrichment |
MF | GO:0008168 | methyltransferase activity | IEP | Enrichment |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Enrichment |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Enrichment |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Enrichment |
BP | GO:0009073 | aromatic amino acid family biosynthetic process | IEP | Enrichment |
BP | GO:0009451 | RNA modification | IEP | Enrichment |
MF | GO:0016426 | tRNA (adenine) methyltransferase activity | IEP | Enrichment |
MF | GO:0016429 | tRNA (adenine-N1-)-methyltransferase activity | IEP | Enrichment |
MF | GO:0016740 | transferase activity | IEP | Enrichment |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Enrichment |
MF | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates | IEP | Enrichment |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Enrichment |
BP | GO:0030488 | tRNA methylation | IEP | Enrichment |
BP | GO:0030490 | maturation of SSU-rRNA | IEP | Enrichment |
MF | GO:0030515 | snoRNA binding | IEP | Enrichment |
CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | Enrichment |
BP | GO:0032259 | methylation | IEP | Enrichment |
BP | GO:0032774 | RNA biosynthetic process | IEP | Enrichment |
CC | GO:0034708 | methyltransferase complex | IEP | Enrichment |
BP | GO:0043414 | macromolecule methylation | IEP | Enrichment |
CC | GO:0043527 | tRNA methyltransferase complex | IEP | Enrichment |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
CC | GO:1990234 | transferase complex | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000238 | RbfA | 36 | 153 |
No external refs found! |