TP10G01150.1


Description : TOPRIM domain; DNA topoisomerase, type IIA, subunit A/C-terminal; DNA topoisomerase, type IIA, subunit B, domain 2; C-terminal associated domain of TOPRIM [Interproscan].


Gene families : OG_01_0001339 (OrthoFinder) Phylogenetic Tree(s): OG0001339_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP10G01150.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021433.2 tig00021433_g21256.t1 DNA topoisomerase 2 OS=Arabidopsis thaliana 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR002205 Topo_IIA_A/C 695 1150
IPR013506 Topo_IIA_bsu_dom2 234 402
IPR031660 TOPRIM_C 556 693
IPR006171 TOPRIM_domain 437 538
No external refs found!