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  5. TP05G06610.1

TP05G06610.1


Description : AP complex, mu/sigma subunit [Interproscan].


Gene families : OG_01_0000426 (OrthoFinder) Phylogenetic Tree(s): OG0000426_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP05G06610.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Cre07.g324600 30775415, AP2S2 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.04 OrthoFinder
Cre07.g330950 30774543, AP4S4 Vesicle trafficking.endomembrane trafficking.vacuolar... 0.03 OrthoFinder
Cre09.g394100 30781425, AP1S1 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder
Sro9_g007570.1 Contig4120.g31525 AP-1 complex subunit sigma 0.03 OrthoFinder
SymbC1.scaffold9595.1 9595.1 AP complex, mu/sigma subunit [Interproscan]. 0.02 OrthoFinder
Transcript_contig_55878 55878 AP complex, mu/sigma subunit [Interproscan]. 0.02 OrthoFinder
UNPLg00105.t1 No alias AP complex, mu/sigma subunit [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44838.1_1803 PRW44838 AP-2 complex subunit sigma 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0097526 spliceosomal tri-snRNP complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR022775 AP_mu_sigma_su 1 144
No external refs found!