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Description : SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan].
Gene families : OG_01_0000532 (OrthoFinder) Phylogenetic Tree(s): OG0000532_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: TP03G01810.1 | |
| Cluster | HCCA: Cluster_9 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00020562.25 | tig00020562_g11151.t1 | RNA processing.RNA modification.rRNA/tRNA... | 0.05 | OrthoFinder | |
| Cre03.g179860 | 30786956 | RNA processing.RNA modification.rRNA/tRNA... | 0.05 | OrthoFinder | |
| Cz01g45120.t1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| Cz01g45130.t1 | No alias | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.06 | OrthoFinder | |
| EOD09582 | No alias | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.04 | OrthoFinder | |
| OT_13G01820.1 | No alias | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.04 | OrthoFinder | |
| PTI_16G01630.1 | No alias | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.06 | OrthoFinder | |
| Transcript_contig_57256 | 57256 | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.02 | OrthoFinder | |
| XM_002503226.1 | MICPUN_59410, 59410 | SAM-dependent methyltransferase RsmB/NOP2-type; CCT... | 0.06 | OrthoFinder | |
| XM_003057672.1 | MicpuC2_15736, 15736 | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.02 | OrthoFinder | |
| XM_003058639.1 | MicpuC2_39576, 39576 | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.02 | OrthoFinder | |
| XM_003061244.1 | MicpuC2_45780, 45780 | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.05 | OrthoFinder | |
| lcl|LHPG02000018.1_cds_PRW32836.1_3709 | PRW32836 | TRNA (cytosine(34)-C(5))-methyltransferase | 0.07 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008168 | methyltransferase activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003743 | translation initiation factor activity | IEP | Enrichment |
| MF | GO:0004637 | phosphoribosylamine-glycine ligase activity | IEP | Enrichment |
| MF | GO:0004749 | ribose phosphate diphosphokinase activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| MF | GO:0005525 | GTP binding | IEP | Enrichment |
| CC | GO:0005730 | nucleolus | IEP | Enrichment |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Enrichment |
| BP | GO:0006099 | tricarboxylic acid cycle | IEP | Enrichment |
| BP | GO:0006144 | purine nucleobase metabolic process | IEP | Enrichment |
| BP | GO:0006413 | translational initiation | IEP | Enrichment |
| BP | GO:0009112 | nucleobase metabolic process | IEP | Enrichment |
| BP | GO:0009113 | purine nucleobase biosynthetic process | IEP | Enrichment |
| MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Enrichment |
| MF | GO:0016778 | diphosphotransferase activity | IEP | Enrichment |
| MF | GO:0016887 | ATPase | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Enrichment |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Enrichment |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| MF | GO:0031369 | translation initiation factor binding | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| BP | GO:0042254 | ribosome biogenesis | IEP | Enrichment |
| BP | GO:0042440 | pigment metabolic process | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
| BP | GO:0046112 | nucleobase biosynthetic process | IEP | Enrichment |
| BP | GO:0046148 | pigment biosynthetic process | IEP | Enrichment |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001678 | MeTrfase_RsmB/NOP2 | 127 | 395 |
| No external refs found! |