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  5. Sro945_g223150.1

Sro945_g223150.1 (Contig53.g396)


Aliases : Contig53.g396

Description : 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase


Gene families : OG_01_0001052 (OrthoFinder) Phylogenetic Tree(s): OG0001052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro945_g223150.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cre12.g529500 30792231 No description available 0.3 OrthoFinder
Cz10g22050.t1 No alias Ribosomal RNA methyltransferase FtsJ domain; Ribosomal... 0.18 OrthoFinder
EOD10706 No alias Ribosomal RNA methyltransferase FtsJ domain; Ribosomal... 0.02 OrthoFinder
OT_16G00640.1 No alias Ribosomal RNA methyltransferase Spb1, domain of unknown... 0.21 OrthoFinder
PTI_07G00840.1 No alias Ribosomal RNA methyltransferase, Spb1, C-terminal;... 0.31 OrthoFinder
Transcript_contig_55971 55971 Ribosomal RNA methyltransferase, Spb1, C-terminal [Interproscan]. 0.09 OrthoFinder
Transcript_contig_56474 56474 Ribosomal RNA methyltransferase Spb1, domain of unknown... 0.11 OrthoFinder
Vocar.0037s0081.1 32897572 Ribosomal RNA methyltransferase Spb1, domain of unknown... 0.05 OrthoFinder
XM_002508465.1 MICPUN_85499, 85499 Ribosomal RNA methyltransferase FtsJ domain [Interproscan]. 0.16 OrthoFinder
XM_003057242.1 MicpuC2_14938, 14938 Ribosomal RNA methyltransferase FtsJ domain [Interproscan]. 0.08 OrthoFinder
XM_003061074.1 MicpuC2_60535, 60535 Ribosomal RNA methyltransferase, Spb1, C-terminal [Interproscan]. 0.09 OrthoFinder
lcl|BLLF01004020.1_cds_GFH28754.1_23231 HaLaN_27296, GFH28754 2'-O-ribose RNA methyltransferase SPB1 homolog 0.03 OrthoFinder
lcl|BLLF01004020.1_cds_GFH28756.1_23233 HaLaN_27298, GFH28756 Hypothetical protein 0.04 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59215.1_7077 PRW59215 TRNA (cytidine(32) guanosine(34)-2-O)-methyltransferase 0.01 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56316.1_10006 PRW56316 AdoMet-dependent rRNA methyltransferase spb1 0.24 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494783.1_3313 KAA8494783 Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
BP GO:0032259 methylation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004408 holocytochrome-c synthase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016846 carbon-sulfur lyase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR002877 rRNA_MeTrfase_FtsJ_dom 24 220
IPR012920 rRNA_MeTfrase_Spb1_C 800 998
IPR024576 rRNA_MeTfrase_Spb1_DUF3381 264 445
No external refs found!