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  5. Sro93_g048640.1

Sro93_g048640.1 (Contig3841.g29552)


Aliases : Contig3841.g29552

Description : Coatomer subunit beta


Gene families : OG_01_0001908 (OrthoFinder) Phylogenetic Tree(s): OG0001908_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro93_g048640.1
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020903.33 tig00020903_g15100.t1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 OrthoFinder
Cre02.g118500 30785510, COPB2 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 OrthoFinder
Dusal.0118s00002.1 33199925 WD40 repeat; Coatomer, WD associated region [Interproscan]. 0.04 OrthoFinder
OT_01G02470.1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.03 OrthoFinder
PTI_09G00050.1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.03 OrthoFinder
TP04G00710.1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.07 OrthoFinder
Transcript_contig_54449 54449 Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.01 OrthoFinder
UNPLg00368.t1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.02 OrthoFinder
Vocar.0033s0044.1 32886333 WD40 repeat; Coatomer, WD associated region [Interproscan]. 0.04 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492792.1_2528 KAA8492792 Coatomer subunit beta'-1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Enrichment
MF GO:0004620 phospholipase activity IEP Enrichment
MF GO:0004629 phospholipase C activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 336 782
IPR001680 WD40_repeat 179 215
IPR001680 WD40_repeat 13 43
IPR001680 WD40_repeat 90 127
IPR001680 WD40_repeat 133 170
IPR001680 WD40_repeat 221 256
No external refs found!