Sro756_g197850.1 (Contig3619.g28001)


Aliases : Contig3619.g28001

Description : Glycine--tRNA ligase (Fragment)


Gene families : OG_01_0002441 (OrthoFinder) Phylogenetic Tree(s): OG0002441_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro756_g197850.1
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000478.12 tig00000478_g1262.t1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder
Cpa|evm.model.tig00000478.13 tig00000478_g1262.t1 Glycine--tRNA ligase, mitochondrial 1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre05.g233800 30783061 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.04 OrthoFinder
Dusal.0444s00004.1 33192969 Anticodon-binding; WHEP-TRS domain; Aminoacyl-tRNA... 0.02 OrthoFinder
OT_07G02860.1 No alias Anticodon-binding; Aminoacyl-tRNA synthetase, class II... 0.1 OrthoFinder
PTI_06G03730.1 No alias WHEP-TRS domain; Anticodon-binding [Interproscan]. 0.02 OrthoFinder
TP01G09670.1 No alias Anticodon-binding; Aminoacyl-tRNA synthetase, class II... 0.03 OrthoFinder
Transcript_contig_54589 54589 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) [Interproscan]. 0.05 OrthoFinder
Vocar.0003s0434.1 32889060 WHEP-TRS domain; Aminoacyl-tRNA synthetase, class II (G/... 0.02 OrthoFinder
XM_002499556.1 MICPUN_78842, 78842 Anticodon-binding; WHEP-TRS domain; Aminoacyl-tRNA... 0.06 OrthoFinder
XM_003058176.1 MicpuC2_57478, 57478 WHEP-TRS domain; Anticodon-binding; Aminoacyl-tRNA... 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56256.1_9956 PRW56256 Glycyl-tRNA synthetase 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499972.1_8925 KAA8499972 Glycine--tRNA ligase, mitochondrial 1 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003852 2-isopropylmalate synthase activity IEP Enrichment
MF GO:0004399 histidinol dehydrogenase activity IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
MF GO:0004834 tryptophan synthase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006551 leucine metabolic process IEP Enrichment
BP GO:0006568 tryptophan metabolic process IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006586 indolalkylamine metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009098 leucine biosynthetic process IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
BP GO:0031204 posttranslational protein targeting to membrane, translocation IEP Enrichment
CC GO:0031207 Sec62/Sec63 complex IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0042430 indole-containing compound metabolic process IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065002 intracellular protein transmembrane transport IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0071806 protein transmembrane transport IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004154 Anticodon-bd 568 653
IPR000738 WHEP-TRS_dom 23 64
No external refs found!