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  5. Sro453_g146140.1

Sro453_g146140.1 (Contig1693.g15171)


Aliases : Contig1693.g15171

Description : RNA polymerase 2, chloroplastic/mitochondrial


Gene families : OG_01_0004012 (OrthoFinder) Phylogenetic Tree(s): OG0004012_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro453_g146140.1
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021493.49 tig00021493_g21888.t1 RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder
Cz11g01070.t1 No alias DNA-directed RNA polymerase, N-terminal; DNA-directed... 0.02 OrthoFinder
Dusal.0107s00021.1 33192121 DNA-directed RNA polymerase, phage-type; DNA-directed... 0.01 OrthoFinder
PTI_22G01800.1 No alias DNA-directed RNA polymerase, phage-type; DNA-directed... 0.12 OrthoFinder
TP02G07610.1 No alias DNA-directed RNA polymerase, N-terminal; DNA-directed... 0.05 OrthoFinder
Vocar.0001s1539.1 32884920 DNA-directed RNA polymerase, N-terminal; DNA-directed... 0.03 OrthoFinder
XM_003059239.1 MicpuC2_17826, 17826 DNA-directed RNA polymerase, phage-type; DNA-directed... 0.05 OrthoFinder
lcl|BLLF01004360.1_cds_GFH29467.1_23944 HaLaN_28127, GFH29467 DNA-directed RNA polymerase 0.01 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32901.1_3668 PRW32901 DNA-directed RNA polymerase chloroplastic mitochondrial 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499719.1_8672 KAA8499719 DNA-directed RNA polymerase 3, chloroplastic 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006360 transcription by RNA polymerase I IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR029262 RPOL_N 240 642
IPR002092 DNA-dir_Rpol_phage-type 793 1209
No external refs found!