1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro28_g018500.1

Sro28_g018500.1 (Contig404.g5459)


Aliases : Contig404.g5459

Description : Sensor protein kinase WalK (Fragment)


Gene families : OG_01_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro28_g018500.1
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000042.236 tig00000042_g15634.t1 Probable histidine kinase 3 OS=Oryza sativa subsp. indica 0.01 OrthoFinder
Cpa|evm.model.tig00000190.17 tig00000190_g13838.t1 Probable histidine kinase 3 OS=Oryza sativa subsp. indica 0.02 OrthoFinder
Cpa|evm.model.tig00001224.9 tig00001224_g7632.t1 Histidine kinase 5 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00020610.13 tig00020610_g11951.t1 Histidine kinase 2 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00021517.20 tig00021517_g22008.t1 Probable histidine kinase 6 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder
Cpa|evm.model.tig00021682.12 tig00021682_g23102.t1 No description available 0.02 OrthoFinder
Cre01.g038050 30788425 No description available 0.03 OrthoFinder
Cre02.g074150 30785488, COP5 Histidine kinase 5 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre17.g733150 30781867 Histidine kinase 3 OS=Arabidopsis thaliana 0.02 OrthoFinder
Sro1435_g272380.1 Contig4058.g31114 Hybrid signal transduction histidine kinase J 0.03 OrthoFinder
Sro1466_g275080.1 Contig2211.g18351 Peroxide stress-activated histidine kinase mak2 0.09 OrthoFinder
Sro14_g010640.1 Contig1128.g10813 Respiration control sensor protein ArcB 0.05 OrthoFinder
Sro164_g073700.1 Contig4339.g32744 Peroxide stress-activated histidine kinase mak2 0.04 OrthoFinder
Sro325_g117780.1 Contig3568.g27567 Respiration control sensor protein ArcB 0.04 OrthoFinder
Sro33_g021480.1 Contig2613.g21169 Sensor kinase/phosphatase LuxQ 0.07 OrthoFinder
Sro433_g141880.1 Contig4540.g33950 Sensor kinase/phosphatase LuxQ 0.04 OrthoFinder
Sro508_g156640.1 Contig2824.g22619 Hybrid signal transduction histidine kinase K 0.04 OrthoFinder
Sro548_g164350.1 Contig1714.g15315 Sensor protein kinase WalK (Fragment) 0.05 OrthoFinder
TP03G08180.1 No alias Signal transduction response regulator, receiver domain... 0.02 OrthoFinder
Vocar.0003s0423.1 32889392 Histidine kinase/HSP90-like ATPase; Signal transduction... 0.01 OrthoFinder
Vocar.0018s0081.1 32898547 Signal transduction response regulator, receiver domain... 0.01 OrthoFinder
Vocar.0069s0008.1 32896762 Histidine kinase/HSP90-like ATPase; Signal transduction... 0.01 OrthoFinder
lcl|BLLF01000561.1_cds_GFH12981.1_7458 HaLaN_08775, GFH12981 Signal transduction histidine kinase,... 0.01 OrthoFinder
lcl|BLLF01000788.1_cds_GFH14961.1_9438 HaLaN_11105, GFH14961 Signal transduction histidine kinase,... 0.02 OrthoFinder
lcl|BLLF01001142.1_cds_GFH17401.1_11878 HaLaN_14031, GFH17401 Signal transduction response regulator, receiver domain;... 0.01 OrthoFinder
lcl|BLLF01001346.1_cds_GFH18735.1_13212 HaLaN_15586, GFH18735 Signal transduction histidine kinase,... 0.01 OrthoFinder
lcl|BLLF01003144.1_cds_GFH26486.1_20963 HaLaN_24644, GFH26486 Histidine kinase/HSP90-like ATPase [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01008570.1_cds_GFH33431.1_27908 HaLaN_32803, GFH33431 Chlamyopsin-6 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0004888 transmembrane signaling receptor activity IEP Enrichment
MF GO:0004930 G protein-coupled receptor activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
MF GO:0038023 signaling receptor activity IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
MF GO:0060089 molecular transducer activity IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR003661 HisK_dim/P 352 418
IPR003594 HATPase_C 494 620
IPR013655 PAS_fold_3 244 335
IPR001789 Sig_transdc_resp-reg_receiver 696 818
No external refs found!