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  5. Sro1996_g310020.1

Sro1996_g310020.1 (Contig3556.g27463)


Aliases : Contig3556.g27463

Description : Elongator complex protein 4


Gene families : OG_01_0015182 (OrthoFinder) Phylogenetic Tree(s): OG0015182_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1996_g310020.1
Cluster HCCA: Cluster_321

Target Alias Description ECC score Gene Family Method Actions
TP05G08170.1 No alias Elongator complex protein 4 [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0002098 tRNA wobble uridine modification IEA Interproscan
CC GO:0033588 elongator holoenzyme complex IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000814 ESCRT II complex IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0004659 prenyltransferase activity IEP Enrichment
CC GO:0005779 integral component of peroxisomal membrane IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0007031 peroxisome organization IEP Enrichment
CC GO:0008303 caspase complex IEP Enrichment
MF GO:0008318 protein prenyltransferase activity IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0016255 attachment of GPI anchor to protein IEP Enrichment
CC GO:0016592 mediator complex IEP Enrichment
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016972 thiol oxidase activity IEP Enrichment
BP GO:0018342 protein prenylation IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
CC GO:0042765 GPI-anchor transamidase complex IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
BP GO:0097354 prenylation IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR008728 Elongator_complex_protein_4 27 396
No external refs found!