Aliases : Contig3529.g27272
Description : Complex component RRP45
Gene families : OG_01_0000474 (OrthoFinder) Phylogenetic Tree(s): OG0000474_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Sro1649_g288620.1 | |
Cluster | HCCA: Cluster_185 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00020780.29 | tig00020780_g13782.t1 | RNA processing.RNA decay.exosome complex.EXO9 core... | 0.02 | OrthoFinder | |
Cpa|evm.model.tig00020912.53 | tig00020912_g15825.t1 | RNA processing.RNA decay.exosome complex.EXO9 core... | 0.02 | OrthoFinder | |
Cre03.g175000 | 30787917 | RNA processing.RNA decay.exosome complex.EXO9 core... | 0.03 | OrthoFinder | |
Cre03.g188200 | 30786998 | No description available | 0.02 | OrthoFinder | |
Cre10.g440900 | 30789863, RRP43 | No description available | 0.01 | OrthoFinder | |
Cz01g30190.t1 | No alias | Exoribonuclease, phosphorolytic domain 2;... | 0.02 | OrthoFinder | |
EOD09221 | No alias | Exoribonuclease, phosphorolytic domain 1 [Interproscan]. | 0.01 | OrthoFinder | |
EOD35496 | No alias | Exoribonuclease, phosphorolytic domain 1 [Interproscan]. | 0.01 | OrthoFinder | |
OT_08G03460.1 | No alias | Exoribonuclease, phosphorolytic domain 1;... | 0.04 | OrthoFinder | |
PTI_27G00240.1 | No alias | Exoribonuclease, phosphorolytic domain 1 [Interproscan]. | 0.03 | OrthoFinder | |
TP11G00970.1 | No alias | Exoribonuclease, phosphorolytic domain 1 [Interproscan]. | 0.03 | OrthoFinder | |
TP15G00840.1 | No alias | Exoribonuclease, phosphorolytic domain 1 [Interproscan]. | 0.02 | OrthoFinder | |
Transcript_contig_3426 | 3426 | Exoribonuclease, phosphorolytic domain 1 [Interproscan]. | 0.01 | OrthoFinder | |
Vocar.0068s0001.1 | 32895511 | Exoribonuclease, phosphorolytic domain 1;... | 0.05 | OrthoFinder | |
lcl|BLLF01000557.1_cds_GFH12946.1_7423 | HaLaN_08730, GFH12946 | 3'-5'-exoribonuclease/RNA binding-like protein | 0.01 | OrthoFinder | |
lcl|BLLF01001494.1_cds_GFH19634.1_14111 | HaLaN_16607, GFH19634 | Exoribonuclease, phosphorolytic domain 1;... | 0.01 | OrthoFinder | |
lcl|LHPG02000002.1_cds_PRW60343.1_4236 | PRW60343 | Exosome complex component RRP42 | 0.03 | OrthoFinder | |
lcl|VRMN01000003.1_cds_KAA8495726.1_1724 | KAA8495726 | Exosome complex component rrp45 | 0.01 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
BP | GO:0001522 | pseudouridine synthesis | IEP | Enrichment |
MF | GO:0003674 | molecular_function | IEP | Enrichment |
MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
MF | GO:0003677 | DNA binding | IEP | Enrichment |
MF | GO:0003678 | DNA helicase activity | IEP | Enrichment |
MF | GO:0003723 | RNA binding | IEP | Enrichment |
MF | GO:0003824 | catalytic activity | IEP | Enrichment |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Enrichment |
MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | Enrichment |
MF | GO:0004386 | helicase activity | IEP | Enrichment |
MF | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | IEP | Enrichment |
MF | GO:0004749 | ribose phosphate diphosphokinase activity | IEP | Enrichment |
MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Enrichment |
MF | GO:0005488 | binding | IEP | Enrichment |
MF | GO:0005524 | ATP binding | IEP | Enrichment |
CC | GO:0005667 | transcription regulator complex | IEP | Enrichment |
CC | GO:0005669 | transcription factor TFIID complex | IEP | Enrichment |
CC | GO:0005777 | peroxisome | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
BP | GO:0006265 | DNA topological change | IEP | Enrichment |
BP | GO:0006325 | chromatin organization | IEP | Enrichment |
BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Enrichment |
BP | GO:0006354 | DNA-templated transcription, elongation | IEP | Enrichment |
BP | GO:0006368 | transcription elongation from RNA polymerase II promoter | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
BP | GO:0006397 | mRNA processing | IEP | Enrichment |
BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0006996 | organelle organization | IEP | Enrichment |
BP | GO:0007031 | peroxisome organization | IEP | Enrichment |
CC | GO:0008023 | transcription elongation factor complex | IEP | Enrichment |
BP | GO:0008033 | tRNA processing | IEP | Enrichment |
MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
BP | GO:0008150 | biological_process | IEP | Enrichment |
BP | GO:0008152 | metabolic process | IEP | Enrichment |
MF | GO:0008168 | methyltransferase activity | IEP | Enrichment |
MF | GO:0008170 | N-methyltransferase activity | IEP | Enrichment |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Enrichment |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Enrichment |
BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
BP | GO:0009451 | RNA modification | IEP | Enrichment |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Enrichment |
BP | GO:0009987 | cellular process | IEP | Enrichment |
BP | GO:0016043 | cellular component organization | IEP | Enrichment |
BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Enrichment |
BP | GO:0016569 | covalent chromatin modification | IEP | Enrichment |
BP | GO:0016570 | histone modification | IEP | Enrichment |
CC | GO:0016593 | Cdc73/Paf1 complex | IEP | Enrichment |
MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | Enrichment |
MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | Enrichment |
MF | GO:0016728 | oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor | IEP | Enrichment |
MF | GO:0016740 | transferase activity | IEP | Enrichment |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
MF | GO:0016778 | diphosphotransferase activity | IEP | Enrichment |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Enrichment |
MF | GO:0016853 | isomerase activity | IEP | Enrichment |
MF | GO:0016866 | intramolecular transferase activity | IEP | Enrichment |
MF | GO:0016887 | ATPase | IEP | Enrichment |
MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Enrichment |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Enrichment |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Enrichment |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
BP | GO:0031123 | RNA 3'-end processing | IEP | Enrichment |
BP | GO:0031124 | mRNA 3'-end processing | IEP | Enrichment |
MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
BP | GO:0032774 | RNA biosynthetic process | IEP | Enrichment |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Enrichment |
BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Enrichment |
BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
MF | GO:0036094 | small molecule binding | IEP | Enrichment |
CC | GO:0042579 | microbody | IEP | Enrichment |
MF | GO:0043167 | ion binding | IEP | Enrichment |
MF | GO:0043168 | anion binding | IEP | Enrichment |
BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
BP | GO:0043412 | macromolecule modification | IEP | Enrichment |
BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Enrichment |
BP | GO:0051276 | chromosome organization | IEP | Enrichment |
MF | GO:0061731 | ribonucleoside-diphosphate reductase activity | IEP | Enrichment |
BP | GO:0071103 | DNA conformation change | IEP | Enrichment |
BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | Enrichment |
MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
MF | GO:0097747 | RNA polymerase activity | IEP | Enrichment |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
CC | GO:0140513 | nuclear protein-containing complex | IEP | Enrichment |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Enrichment |
MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
No external refs found! |