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  5. Sro1407_g270000.1

Sro1407_g270000.1 (Contig1773.g15693)


Aliases : Contig1773.g15693

Description : Clathrin heavy chain 1


Gene families : OG_01_0002678 (OrthoFinder) Phylogenetic Tree(s): OG0002678_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1407_g270000.1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000042.11 tig00000042_g15397.t1 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.06 OrthoFinder
Cz07g27260.t1 No alias Clathrin, heavy chain, propeller repeat; Clathrin, heavy... 0.08 OrthoFinder
Dusal.0114s00011.1 33202239 Clathrin-H-link; Clathrin, heavy chain, linker, core... 0.04 OrthoFinder
EOD40774 No alias Clathrin heavy chain [Ensembl]. 0.02 OrthoFinder
OT_01G01810.1 No alias Clathrin, heavy chain/VPS, 7-fold repeat;... 0.05 OrthoFinder
PTI_15G00340.1 No alias Clathrin, heavy chain/VPS, 7-fold repeat;... 0.08 OrthoFinder
TP10G03700.1 No alias Clathrin-H-link; Clathrin, heavy chain, linker, core... 0.07 OrthoFinder
Transcript_contig_54377 54377 Clathrin, heavy chain/VPS, 7-fold repeat;... 0.02 OrthoFinder
Vocar.0036s0110.1 32892264 Clathrin-H-link; Clathrin, heavy chain/VPS, 7-fold... 0.07 OrthoFinder
XM_002500509.1 MICPUN_105289, 105289 Clathrin, heavy chain, propeller repeat; Clathrin, heavy... 0.04 OrthoFinder
lcl|BLLF01003272.1_cds_GFH26883.1_21360 HaLaN_25106, GFH26883 Clathrin heavy chain 0.07 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61204.1_268 PRW61204 Clathrin heavy chain 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA Interproscan
CC GO:0030132 clathrin coat of coated pit IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Enrichment
CC GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain IEP Enrichment
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
MF GO:0004594 pantothenate kinase activity IEP Enrichment
MF GO:0004779 sulfate adenylyltransferase activity IEP Enrichment
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Enrichment
MF GO:0005092 GDP-dissociation inhibitor activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
BP GO:0007264 small GTPase mediated signal transduction IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
MF GO:0019829 ATPase-coupled cation transmembrane transporter activity IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Enrichment
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
MF GO:0035251 UDP-glucosyltransferase activity IEP Enrichment
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Enrichment
MF GO:0046527 glucosyltransferase activity IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0120227 acyl-CoA binding IEP Enrichment
MF GO:1901567 fatty acid derivative binding IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR022365 Clathrin_H-chain_propeller_rpt 144 184
IPR000547 Clathrin_H-chain/VPS_repeat 1157 1294
IPR000547 Clathrin_H-chain/VPS_repeat 1453 1593
IPR000547 Clathrin_H-chain/VPS_repeat 837 965
IPR000547 Clathrin_H-chain/VPS_repeat 991 1145
IPR000547 Clathrin_H-chain/VPS_repeat 1301 1442
IPR000547 Clathrin_H-chain/VPS_repeat 690 823
IPR000547 Clathrin_H-chain/VPS_repeat 543 671
IPR015348 Clathrin_H-chain_linker_core 335 356
No external refs found!