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  5. Sro1322_g262550.1

Sro1322_g262550.1 (Contig3764.g28905)


Aliases : Contig3764.g28905

Description : Multiple drug resistance-associated protein-like transporter 1


Gene families : OG_01_0000039 (OrthoFinder) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1322_g262550.1
Cluster HCCA: Cluster_331

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000158.84 tig00000158_g10189.t1 Solute transport.primary active transport.ABC... 0.01 OrthoFinder
Cpa|evm.model.tig00000718.1 tig00000718_g3679.t1 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cpa|evm.model.tig00000718.2 tig00000718_g3679.t1 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cpa|evm.model.tig00000718.3 tig00000718_g3679.t1 ABC transporter C family member 6 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00000769.1 tig00000769_g3997.t1 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00001024.2 tig00001729_g9740.t1 ABC transporter C family member 14 OS=Arabidopsis thaliana 0.06 OrthoFinder
Cpa|evm.model.tig00001729.6 tig00001729_g9740.t1 Solute transport.primary active transport.ABC... 0.04 OrthoFinder
Cpa|evm.model.tig00020553.190 tig00020553_g10680.t1 ABC transporter C family member 4 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cpa|evm.model.tig00020553.191 tig00020553_g10681.t1 ABC transporter C family member 11 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cpa|evm.model.tig00020592.4 tig00020592_g11633.t1 ABC transporter C family member 1 OS=Arabidopsis thaliana 0.06 OrthoFinder
Cpa|evm.model.tig00020684.9 tig00020684_g12858.t1 Solute transport.primary active transport.ABC... 0.02 OrthoFinder
Cre13.g564900 30784450, MRP3 Solute transport.primary active transport.ABC... 0.03 OrthoFinder
Cre17.g734612 30781956, MRP2 ABC transporter C family member 14 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz01g21250.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
Cz01g21260.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.03 OrthoFinder
Cz05g17060.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.05 OrthoFinder
Dusal.0432s00003.1 33197469 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
Dusal.0852s00004.1 33185428 ABC transporter-like; ABC transporter type 1,... 0.04 OrthoFinder
EOD08599 No alias ABC transporter type 1, transmembrane domain; ABC... 0.07 OrthoFinder
EOD18360 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
EOD26066 No alias EF-hand domain; ABC transporter type 1, transmembrane... 0.06 OrthoFinder
EOD33714 No alias ABC transporter type 1, transmembrane domain; ABC... 0.04 OrthoFinder
EOD37777 No alias Multidrug resistance-associated protein, ABC superfamily... 0.06 OrthoFinder
PTI_03G06590.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.03 OrthoFinder
TP04G05700.1 No alias ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
TP07G05800.1 No alias ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
Transcript_contig_54369 54369 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
Transcript_contig_56264 56264 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
Vocar.0012s0088.1 32894879 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
Vocar.0028s0030.1 32895600 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
XM_002508173.1 MICPUN_94915, 94915 ATP-binding cassette superfamily 0.03 OrthoFinder
XM_003055793.1 MicpuC2_55005, 55005 ATP-binding cassette superfamily 0.01 OrthoFinder
XM_003055794.1 MicpuC2_55006, 55006 ATP-binding cassette superfamily 0.01 OrthoFinder
lcl|BLLF01000184.1_cds_GFH08792.1_3269 HaLaN_03816, GFH08792 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
lcl|BLLF01003175.1_cds_GFH26596.1_21073 HaLaN_24770, GFH26596 ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56046.1_9960 PRW56046 Multidrug resistance-associated 1 isoform X1 0.02 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20906.1_5063 PRW20906 ABC transporter C family member 13 isoform X1 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
CC GO:0005886 plasma membrane IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006694 steroid biosynthetic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006783 heme biosynthetic process IEP Enrichment
BP GO:0006784 heme A biosynthetic process IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016125 sterol metabolic process IEP Enrichment
BP GO:0016126 sterol biosynthetic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
BP GO:0046160 heme a metabolic process IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 171 439
IPR011527 ABC1_TM_dom 918 1172
IPR003439 ABC_transporter-like_ATP-bd 602 740
IPR003439 ABC_transporter-like_ATP-bd 1249 1415
No external refs found!