Sro1226_g254200.1 (Contig1389.g12811)

Aliases : Contig1389.g12811

Description : RRNA 2'-O-methyltransferase fibrillarin

Gene families : OG_01_0002387 (OrthoFinder) Phylogenetic Tree(s): OG0002387_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro1226_g254200.1
Cluster	HCCA: Cluster_206

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00001049.16	tig00001049_g6665.t1	RNA processing.RNA modification.rRNA/tRNA...	0.05	OrthoFinder
Cre02.g077300	30785723, NOP1	RNA processing.RNA modification.rRNA/tRNA...	0.04	OrthoFinder
Cz10g07040.t1	No alias	Fibrillarin [Interproscan].	0.06	OrthoFinder
Dusal.0325s00010.1	33191960	Fibrillarin [Interproscan].	0.01	OrthoFinder
EOD07048	No alias	Ubiquitin-like domain; Fibrillarin [Interproscan].	0.02	OrthoFinder
OT_07G01210.1	No alias	Fibrillarin [Interproscan].	0.03	OrthoFinder
PTI_20G00150.1	No alias	Fibrillarin [Interproscan].	0.05	OrthoFinder
TP13G01650.1	No alias	Fibrillarin [Interproscan].	0.06	OrthoFinder
Transcript_contig_54582	54582	Fibrillarin [Interproscan].	0.02	OrthoFinder
Vocar.0030s0076.1	32894520	Fibrillarin [Interproscan].	0.02	OrthoFinder
XM_002499943.1	MICPUN_97046, 97046	Fibrillarin [Interproscan].	0.05	OrthoFinder
lcl\|BLLF01000026.1_cds_GFH06193.1_670	HaLaN_00783, GFH06193	Fibrillarin [Interproscan].	0.05	OrthoFinder
lcl\|BLLF01000255.1_cds_GFH09702.1_4179	HaLaN_04892, GFH09702	Mediator of RNA polymerase II transcription subunit 36a	0.04	OrthoFinder
lcl\|LHPG02000004.1_cds_PRW59290.1_6872	PRW59290	RRNA 2-O-methyltransferase fibrillarin	0.07	OrthoFinder
lcl\|VRMN01000013.1_cds_KAA8491508.1_6318	KAA8491508	Putative mediator of RNA polymerase II transcription subunit 36b	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	Enrichment
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Enrichment
MF	GO:0004527	exonuclease activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
CC	GO:0005737	cytoplasm	IEP	Enrichment
CC	GO:0005741	mitochondrial outer membrane	IEP	Enrichment
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Enrichment
BP	GO:0006325	chromatin organization	IEP	Enrichment
BP	GO:0006334	nucleosome assembly	IEP	Enrichment
BP	GO:0006351	transcription, DNA-templated	IEP	Enrichment
BP	GO:0006400	tRNA modification	IEP	Enrichment
BP	GO:0006413	translational initiation	IEP	Enrichment
BP	GO:0006801	superoxide metabolic process	IEP	Enrichment
MF	GO:0008135	translation factor activity, RNA binding	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
MF	GO:0016853	isomerase activity	IEP	Enrichment
CC	GO:0019867	outer membrane	IEP	Enrichment
CC	GO:0031090	organelle membrane	IEP	Enrichment
CC	GO:0031966	mitochondrial membrane	IEP	Enrichment
CC	GO:0031968	organelle outer membrane	IEP	Enrichment
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Enrichment
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Enrichment
BP	GO:0034728	nucleosome organization	IEP	Enrichment
MF	GO:0045182	translation regulator activity	IEP	Enrichment
BP	GO:0065004	protein-DNA complex assembly	IEP	Enrichment
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Enrichment
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Enrichment
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Enrichment
BP	GO:0097659	nucleic acid-templated transcription	IEP	Enrichment
MF	GO:0097747	RNA polymerase activity	IEP	Enrichment
CC	GO:0098588	bounding membrane of organelle	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000692	Fibrillarin	84	319

External Links

No external refs found!

Sro1226_g254200.1 (Contig1389.g12811)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation