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  5. Sro1215_g253210.1

Sro1215_g253210.1 (Contig2655.g21465)


Aliases : Contig2655.g21465

Description : Sel1 domain protein repeat-containing protein


Gene families : OG_01_0000179 (OrthoFinder) Phylogenetic Tree(s): OG0000179_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1215_g253210.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Sro1011_g230970.1 Contig997.g10070 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro1011_g231050.1 Contig997.g10078 SAM and U-box domain-containing protein 1 0.08 OrthoFinder
Sro1227_g254310.1 Contig334.g4443 U-box domain-containing protein 0.03 OrthoFinder
Sro1438_g272650.1 Contig3435.g26744 Sel1 domain protein repeat-containing protein 0.06 OrthoFinder
Sro1588_g284330.1 Contig4233.g32103 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro214_g088890.1 Contig282.g3674 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro227_g092440.1 Contig327.g4356 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro2419_g327050.1 Contig1625.g14663 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro256_g100570.1 Contig3587.g27702 Hypothetical protein 0.03 OrthoFinder
Sro2646_g333590.1 Contig1915.g16544 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro341_g121570.1 Contig3952.g30289 Sel1 domain protein repeat-containing protein 0.06 OrthoFinder
Sro361_g126480.1 Contig1094.g10573 SAM and U-box domain-containing protein 1 0.03 OrthoFinder
Sro4045_g352650.1 Contig2319.g19150 Hypothetical protein 0.03 OrthoFinder
Sro820_g207210.1 Contig34.g203 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro897_g217530.1 Contig4351.g32806 U box domain [Interproscan]. 0.03 OrthoFinder
Sro963_g225240.1 Contig3377.g26425 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro963_g225290.2 No alias U box domain; Sel1-like repeat [Interproscan]. 0.03 OrthoFinder
Sro983_g227810.1 Contig79.g820 Sel1 domain protein repeat-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000270 peptidoglycan metabolic process IEP Enrichment
MF GO:0003796 lysozyme activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005576 extracellular region IEP Enrichment
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006026 aminoglycan catabolic process IEP Enrichment
BP GO:0006027 glycosaminoglycan catabolic process IEP Enrichment
BP GO:0009253 peptidoglycan catabolic process IEP Enrichment
BP GO:0009405 obsolete pathogenesis IEP Enrichment
BP GO:0016998 cell wall macromolecule catabolic process IEP Enrichment
BP GO:0030203 glycosaminoglycan metabolic process IEP Enrichment
BP GO:0044036 cell wall macromolecule metabolic process IEP Enrichment
MF GO:0061783 peptidoglycan muralytic activity IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR006597 Sel1-like 188 216
IPR006597 Sel1-like 113 149
IPR003613 Ubox_domain 13 79
No external refs found!