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  5. PTI_06G01770.1

PTI_06G01770.1


Description : Radical SAM; Methylthiotransferase, N-terminal [Interproscan].


Gene families : OG_01_0000871 (OrthoFinder) Phylogenetic Tree(s): OG0000871_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_06G01770.1
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
EOD42013 No alias TRAM domain; Methylthiotransferase, N-terminal; Radical... 0.02 OrthoFinder
Sro1534_g280440.1 Contig2033.g17455 TRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.02 OrthoFinder
Vocar.0009s0328.1 32893182 Radical SAM; Methylthiotransferase, N-terminal; TRAM... 0.02 OrthoFinder
XM_002499792.1 MICPUN_78530, 78530 Radical SAM protein with TRAM and UPF0004 domains 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0035596 methylthiotransferase activity IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
MF GO:0051539 4 iron, 4 sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0004140 dephospho-CoA kinase activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004779 sulfate adenylyltransferase activity IEP Enrichment
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
CC GO:0005869 dynactin complex IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Enrichment
BP GO:0009260 ribonucleotide biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015936 coenzyme A metabolic process IEP Enrichment
BP GO:0015937 coenzyme A biosynthetic process IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Enrichment
CC GO:0042575 DNA polymerase complex IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
CC GO:0043625 delta DNA polymerase complex IEP Enrichment
BP GO:0043647 inositol phosphate metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044282 small molecule catabolic process IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
BP GO:0046390 ribose phosphate biosynthetic process IEP Enrichment
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Enrichment
BP GO:0046855 inositol phosphate dephosphorylation IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0071545 inositol phosphate catabolic process IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR007197 rSAM 281 478
IPR013848 Methylthiotransferase_N 126 222
No external refs found!