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  5. PTI_04G04910.1

PTI_04G04910.1


Description : Helicase, C-terminal; SNF2-related, N-terminal domain [Interproscan].


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_04G04910.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000217.25 tig00000217_g19158.t1 Chromatin structure-remodeling complex protein SYD... 0.02 OrthoFinder
Cpa|evm.model.tig00000802.67 tig00000802_g4315.t2 Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00000983.26 tig00000983_g5915.t1 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder
Cpa|evm.model.tig00020960.24 tig00020960_g16545.t1 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cpa|evm.model.tig00021275.25 tig00021275_g19885.t1 Probable chromatin-remodeling complex ATPase chain... 0.02 OrthoFinder
Cre03.g158550 30787160 CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder
Cre03.g179300 30786668 RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder
Cre07.g325700 30774388 ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre09.g390000 30781417 RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder
Cre12.g508150 30793288 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder
Cz02g31160.t1 No alias Helicase, C-terminal; SLIDE domain; SNF2-related,... 0.02 OrthoFinder
Cz19g07040.t1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.03 OrthoFinder
Dusal.0222s00006.1 33201854 SNF2-related, N-terminal domain; Helicase, C-terminal... 0.02 OrthoFinder
Dusal.0357s00004.1 33189829 SNF2-related, N-terminal domain; Helicase, C-terminal;... 0.02 OrthoFinder
EOD17057 No alias Chromodomain helicase DNA binding protein [Ensembl]. 0.03 OrthoFinder
EOD18155 No alias High mobility group box domain; ISWI, HAND domain;... 0.02 OrthoFinder
EOD25651 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.04 OrthoFinder
EOD28310 No alias Chromodomain helicase DNA binding protein [Ensembl]. 0.03 OrthoFinder
EOD34138 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
EOD34139 No alias Hypothetical protein [Ensembl]. 0.02 OrthoFinder
EOD36957 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
OT_07G04400.1 No alias Helicase, C-terminal; ISWI, HAND domain; SNF2-related,... 0.02 OrthoFinder
OT_12G02840.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
Sro125_g060200.1 Contig2833.g22731 Chromodomain-helicase-DNA-binding protein 0.02 OrthoFinder
Sro19_g013190.1 Contig446.g5983 CHD3-type chromatin-remodeling factor 0.01 OrthoFinder
Sro272_g104840.1 Contig2144.g18025 Chromodomain-helicase-DNA-binding protein 0.05 OrthoFinder
Sro2_g001340.1 Contig467.g6292 CHD3-type chromatin-remodeling factor PICKLE 0.04 OrthoFinder
Sro566_g167850.1 Contig3739.g28680 ISWI chromatin-remodeling complex ATPase ISW2 0.05 OrthoFinder
Sro847_g210300.1 Contig4605.g34375 CHD3-type chromatin-remodeling factor 0.04 OrthoFinder
Transcript_contig_67487 67487 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
Transcript_contig_67500 67500 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
Vocar.0004s0442.1 32889776 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
XM_002503134.1 MICPUN_59225, 59225 SNF2 super family 0.02 OrthoFinder
XM_002504726.1 MICPUN_62221, 62221 SNF2 super family 0.02 OrthoFinder
XM_003061313.1 MicpuC2_50939, 50939 SNF2 super family 0.02 OrthoFinder
lcl|BLLF01000629.1_cds_GFH13581.1_8058 HaLaN_09499, GFH13581 SNF2-related, N-terminal domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000629.1_cds_GFH13582.1_8059 HaLaN_09500, GFH13582 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001410.1_cds_GFH19126.1_13603 HaLaN_16027, GFH19126 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61596.1_539 PRW61596 CHD3-type chromatin-remodeling factor PICKLE 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60864.1_4118 PRW60864 SNF2 super family 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56740.1_9705 PRW56740 Chromatin-remodeling complex ATPase chain 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
MF GO:0035251 UDP-glucosyltransferase activity IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
MF GO:0042393 histone binding IEP Enrichment
MF GO:0043531 ADP binding IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
MF GO:0046527 glucosyltransferase activity IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 1604 1708
IPR000330 SNF2_N 1219 1521
No external refs found!