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  5. XM_003058836.1

XM_003058836.1 (MicpuC2_26898, 26898)


Aliases : MicpuC2_26898, 26898

Description : Ribosomal protein L1/ribosomal biogenesis protein [Interproscan].


Gene families : OG_01_0000846 (OrthoFinder) Phylogenetic Tree(s): OG0000846_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003058836.1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Cre02.g088900 30785043, PRPL1 Protein biosynthesis.organelle translation... 0.1 OrthoFinder
Cre06.g278090 30778992, MRPL1 50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder
Cz04g10270.t1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.02 OrthoFinder
Cz06g21190.t1 No alias Hypothetical protein 0.04 OrthoFinder
Cz06g21200.t1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.06 OrthoFinder
Dusal.0427s00003.1 33194227 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.03 OrthoFinder
OT_08G01880.1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.09 OrthoFinder
OT_12G02750.1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.03 OrthoFinder
PTI_17G01960.1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.03 OrthoFinder
Sro353_g124480.1 Contig1923.g16582 Protein L1 0.07 OrthoFinder
Sro51_chlor_g030330.1 Rpl1 Rpl1 0.05 OrthoFinder
TPCG00680.1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.02 OrthoFinder
Vocar.0001s1232.1 32886133 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.03 OrthoFinder
Vocar.0002s0626.1 32891219 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.02 OrthoFinder
XM_002501358.1 MICPUN_90540, 90540 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.11 OrthoFinder
lcl|BLLF01001683.1_cds_GFH20704.1_15181 HaLaN_17870, GFH20704 Ribosomal protein 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW60958.1_645 PRW60958 50S ribosomal L1 0.04 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497267.1_996 KAA8497267 50S ribosomal protein L1 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0004107 chorismate synthase activity IEP Enrichment
MF GO:0004506 squalene monooxygenase activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006497 protein lipidation IEP Enrichment
BP GO:0006505 GPI anchor metabolic process IEP Enrichment
BP GO:0006506 GPI anchor biosynthetic process IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0008320 protein transmembrane transporter activity IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
MF GO:0008521 acetyl-CoA transmembrane transporter activity IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
MF GO:0015215 nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Enrichment
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0022884 macromolecule transmembrane transporter activity IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
MF GO:0042887 amide transmembrane transporter activity IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043044 ATP-dependent chromatin remodeling IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043486 histone exchange IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
MF GO:0071077 adenosine 3',5'-bisphosphate transmembrane transporter activity IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140318 protein transporter activity IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 128 314
No external refs found!