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  5. EOD22189

EOD22189


Description : RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase, alpha subunit [Interproscan].


Gene families : OG_01_0002297 (OrthoFinder) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD22189
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000203.25 tig00000203_g17130.t1 DNA-directed RNA polymerase I subunit 1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre12.g529600 30792110 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.19 OrthoFinder
Cz05g31150.t1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase, alpha... 0.14 OrthoFinder
Dusal.0073s00015.1 33194603 RNA polymerase Rpb1, domain 1; RNA polymerase, alpha... 0.02 OrthoFinder
OT_14G01020.1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.11 OrthoFinder
PTI_00G04260.1 No alias RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.11 OrthoFinder
Sro258_g101130.1 Contig315.g4199 DNA-directed RNA polymerase subunit beta' (Fragment) 0.06 OrthoFinder
TP06G00570.1 No alias RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1,... 0.05 OrthoFinder
Vocar.0037s0083.1 32897652 RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.07 OrthoFinder
XM_002505754.1 MICPUN_65110, 65110 RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.14 OrthoFinder
XM_003063796.1 MicpuC2_36623, 36623 RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.09 OrthoFinder
lcl|BLLF01001934.1_cds_GFH21937.1_16414 HaLaN_19326, GFH21937 DNA-directed RNA polymerase subunit 0.03 OrthoFinder
lcl|BLLF01001934.1_cds_GFH21938.1_16415 HaLaN_19327, GFH21938 DNA-directed RNA polymerase subunit 0.04 OrthoFinder
lcl|BLLF01002728.1_cds_GFH25131.1_19608 HaLaN_23045, GFH25131 DNA-directed RNA polymerase subunit 0.05 OrthoFinder
lcl|BLLF01007679.1_cds_GFH33063.1_27540 HaLaN_32376, GFH33063 DNA-directed RNA polymerase subunit 0.01 OrthoFinder
lcl|LHPG02000006.1_cds_PRW58030.1_8585 PRW58030 DNA-directed RNA polymerase I complex large subunit Nuc1... 0.1 OrthoFinder
lcl|LHPG02000006.1_cds_PRW58031.1_8584 PRW58031 DNA-directed RNA polymerase I complex large subunit Nuc1... 0.01 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8493983.1_3847 KAA8493983 DNA-directed RNA polymerase I subunit rpa1 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004399 histidinol dehydrogenase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016289 CoA hydrolase activity IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016790 thiolester hydrolase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007066 RNA_pol_Rpb1_3 710 892
IPR007080 RNA_pol_Rpb1_1 23 405
IPR007081 RNA_pol_Rpb1_5 1068 1730
IPR000722 RNA_pol_asu 497 706
IPR007083 RNA_pol_Rpb1_4 983 1061
No external refs found!