1. Home
  2. Species
  3. Dunaliella sp.
  4. Sequence
  5. Dusal.0063s00009.1

Dusal.0063s00009.1 (33196767)


Aliases : 33196767

Description : WD40 repeat; Small-subunit processome, Utp21 [Interproscan].


Gene families : OG_01_0002791 (OrthoFinder) Phylogenetic Tree(s): OG0002791_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dusal.0063s00009.1
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021348.51 tig00021348_g20554.t1 No description available 0.03 OrthoFinder
Cre10.g466250 30790775 No description available 0.07 OrthoFinder
Cz08g20100.t1 No alias WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.05 OrthoFinder
EOD22329 No alias WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.04 OrthoFinder
PTI_01G00980.1 No alias Small-subunit processome, Utp21; WD40 repeat [Interproscan]. 0.06 OrthoFinder
Sro1313_g261950.1 Contig4199.g31963 RNA-associated protein 21 homolog 0.04 OrthoFinder
TP02G03700.1 No alias WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.03 OrthoFinder
Transcript_contig_5700 5700 Hypothetical protein 0.03 OrthoFinder
XM_002508565.1 MICPUN_98006, 98006 Small-subunit processome, Utp21; WD40 repeat [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000022.1_cds_GFH06094.1_571 HaLaN_00667, GFH06094 Small-subunit processome, Utp21 [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01001420.1_cds_GFH19190.1_13667 HaLaN_16097, GFH19190 U3 small nucleolar RNA-associated 21-like protein 0.03 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58237.1_8075 PRW58237 U3 small nucleolar RNA-associated 21-like protein 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0032040 small-subunit processome IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP Enrichment
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
MF GO:0019104 DNA N-glycosylase activity IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 586 623
IPR001680 WD40_repeat 507 538
IPR007319 SSU_processome_Utp21 783 1046
No external refs found!