Cz05g17060.t1

Description : ABC transporter type 1, transmembrane domain; ABC transporter-like [Interproscan].

Gene families : OG_01_0000039 (OrthoFinder) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz05g17060.t1
Cluster	HCCA: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000718.1	tig00000718_g3679.t1	ABC transporter C family member 2 OS=Arabidopsis thaliana	0.06	OrthoFinder
Cpa\|evm.model.tig00000718.2	tig00000718_g3679.t1	ABC transporter C family member 2 OS=Arabidopsis thaliana	0.06	OrthoFinder
Cpa\|evm.model.tig00000718.3	tig00000718_g3679.t1	ABC transporter C family member 6 OS=Arabidopsis thaliana	0.05	OrthoFinder
Cpa\|evm.model.tig00000769.1	tig00000769_g3997.t1	ABC transporter C family member 2 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cpa\|evm.model.tig00001024.2	tig00001729_g9740.t1	ABC transporter C family member 14 OS=Arabidopsis thaliana	0.06	OrthoFinder
Cpa\|evm.model.tig00001729.6	tig00001729_g9740.t1	Solute transport.primary active transport.ABC...	0.06	OrthoFinder
Cpa\|evm.model.tig00020553.190	tig00020553_g10680.t1	ABC transporter C family member 4 OS=Arabidopsis thaliana	0.07	OrthoFinder
Cpa\|evm.model.tig00020553.191	tig00020553_g10681.t1	ABC transporter C family member 11 OS=Arabidopsis thaliana	0.07	OrthoFinder
Cpa\|evm.model.tig00020592.4	tig00020592_g11633.t1	ABC transporter C family member 1 OS=Arabidopsis thaliana	0.06	OrthoFinder
Cre07.g325761	30775279	ABC transporter C family member 2 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cre13.g564900	30784450, MRP3	Solute transport.primary active transport.ABC...	0.14	OrthoFinder
Cre17.g734612	30781956, MRP2	ABC transporter C family member 14 OS=Arabidopsis thaliana	0.06	OrthoFinder
Dusal.0852s00004.1	33185428	ABC transporter-like; ABC transporter type 1,...	0.04	OrthoFinder
EOD08599	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.07	OrthoFinder
EOD26066	No alias	EF-hand domain; ABC transporter type 1, transmembrane...	0.1	OrthoFinder
EOD33714	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.05	OrthoFinder
EOD37777	No alias	Multidrug resistance-associated protein, ABC superfamily...	0.07	OrthoFinder
OT_03G00040.1	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.04	OrthoFinder
PTI_03G06590.1	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.03	OrthoFinder
Sro1322_g262550.1	Contig3764.g28905	Multiple drug resistance-associated protein-like transporter 1	0.05	OrthoFinder
Sro183_g079600.1	Contig3056.g24305	Multiple drug resistance-associated protein-like transporter 1	0.04	OrthoFinder
TP07G05800.1	No alias	ABC transporter-like; ABC transporter type 1,...	0.02	OrthoFinder
Transcript_contig_56405	56405	ABC transporter type 1, transmembrane domain; ABC...	0.02	OrthoFinder
Transcript_contig_78893	78893	ABC transporter type 1, transmembrane domain; ABC...	0.02	OrthoFinder
XM_002508173.1	MICPUN_94915, 94915	ATP-binding cassette superfamily	0.07	OrthoFinder
XM_003055793.1	MicpuC2_55005, 55005	ATP-binding cassette superfamily	0.03	OrthoFinder
XM_003055794.1	MicpuC2_55006, 55006	ATP-binding cassette superfamily	0.01	OrthoFinder
lcl\|BLLF01003175.1_cds_GFH26596.1_21073	HaLaN_24770, GFH26596	ABC transporter type 1, transmembrane domain; ABC...	0.02	OrthoFinder
lcl\|LHPG02000009.1_cds_PRW56046.1_9960	PRW56046	Multidrug resistance-associated 1 isoform X1	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016887	ATPase	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Enrichment
MF	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	IEP	Enrichment
MF	GO:0004175	endopeptidase activity	IEP	Enrichment
MF	GO:0004222	metalloendopeptidase activity	IEP	Enrichment
MF	GO:0004252	serine-type endopeptidase activity	IEP	Enrichment
MF	GO:0004325	ferrochelatase activity	IEP	Enrichment
MF	GO:0005506	iron ion binding	IEP	Enrichment
BP	GO:0006289	nucleotide-excision repair	IEP	Enrichment
BP	GO:0006508	proteolysis	IEP	Enrichment
BP	GO:0006694	steroid biosynthetic process	IEP	Enrichment
BP	GO:0006783	heme biosynthetic process	IEP	Enrichment
BP	GO:0007155	cell adhesion	IEP	Enrichment
BP	GO:0008202	steroid metabolic process	IEP	Enrichment
MF	GO:0008233	peptidase activity	IEP	Enrichment
MF	GO:0008236	serine-type peptidase activity	IEP	Enrichment
MF	GO:0008237	metallopeptidase activity	IEP	Enrichment
BP	GO:0016125	sterol metabolic process	IEP	Enrichment
BP	GO:0016126	sterol biosynthetic process	IEP	Enrichment
MF	GO:0016491	oxidoreductase activity	IEP	Enrichment
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Enrichment
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Enrichment
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	Enrichment
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Enrichment
MF	GO:0016787	hydrolase activity	IEP	Enrichment
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Enrichment
MF	GO:0017171	serine hydrolase activity	IEP	Enrichment
BP	GO:0019538	protein metabolic process	IEP	Enrichment
MF	GO:0020037	heme binding	IEP	Enrichment
BP	GO:0022610	biological adhesion	IEP	Enrichment
BP	GO:0042168	heme metabolic process	IEP	Enrichment
BP	GO:0042440	pigment metabolic process	IEP	Enrichment
BP	GO:0044238	primary metabolic process	IEP	Enrichment
BP	GO:0046148	pigment biosynthetic process	IEP	Enrichment
MF	GO:0046872	metal ion binding	IEP	Enrichment
MF	GO:0046906	tetrapyrrole binding	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Enrichment
MF	GO:0051213	dioxygenase activity	IEP	Enrichment
BP	GO:0055114	obsolete oxidation-reduction process	IEP	Enrichment
BP	GO:0071704	organic substance metabolic process	IEP	Enrichment
MF	GO:0071949	FAD binding	IEP	Enrichment
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Enrichment
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	28	260
IPR011527	ABC1_TM_dom	678	930
IPR003439	ABC_transporter-like_ATP-bd	344	478
IPR003439	ABC_transporter-like_ATP-bd	1006	1154

External Links

No external refs found!

Cz05g17060.t1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation