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  5. Cz01g45130.t1

Cz01g45130.t1


Description : SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan].


Gene families : OG_01_0000532 (OrthoFinder) Phylogenetic Tree(s): OG0000532_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz01g45130.t1
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020562.25 tig00020562_g11151.t1 RNA processing.RNA modification.rRNA/tRNA... 0.06 OrthoFinder
Cre03.g179860 30786956 RNA processing.RNA modification.rRNA/tRNA... 0.13 OrthoFinder
Dusal.0039s00007.1 33186951 Hypothetical protein 0.02 OrthoFinder
EOD09582 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.08 OrthoFinder
EOD16004 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.02 OrthoFinder
OT_04G00840.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.02 OrthoFinder
OT_13G01820.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.08 OrthoFinder
PTI_16G01630.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.06 OrthoFinder
Sro107_g053980.1 Contig1548.g14073 Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4a 0.02 OrthoFinder
Sro2022_g311530.1 Contig3299.g25891 Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4a 0.04 OrthoFinder
Sro514_g158160.1 Contig3991.g30657 Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b 0.01 OrthoFinder
SymbC1.scaffold10744.1 10744.1 SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.01 OrthoFinder
TP03G01810.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.06 OrthoFinder
Transcript_contig_57256 57256 SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.03 OrthoFinder
Transcript_contig_59270 59270 Hypothetical protein 0.01 OrthoFinder
Vocar.0015s0322.1 32898844 SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.03 OrthoFinder
XM_002503226.1 MICPUN_59410, 59410 SAM-dependent methyltransferase RsmB/NOP2-type; CCT... 0.11 OrthoFinder
XM_003057672.1 MicpuC2_15736, 15736 SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.04 OrthoFinder
XM_003061244.1 MicpuC2_45780, 45780 SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.06 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32836.1_3709 PRW32836 TRNA (cytosine(34)-C(5))-methyltransferase 0.1 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006144 purine nucleobase metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0009112 nucleobase metabolic process IEP Enrichment
BP GO:0009113 purine nucleobase biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0046112 nucleobase biosynthetic process IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001678 MeTrfase_RsmB/NOP2 170 249
IPR001678 MeTrfase_RsmB/NOP2 284 369
No external refs found!