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  5. Cz01g45120.t1

Cz01g45120.t1


Description : Hypothetical protein


Gene families : OG_01_0000532 (OrthoFinder) Phylogenetic Tree(s): OG0000532_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz01g45120.t1
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020562.25 tig00020562_g11151.t1 RNA processing.RNA modification.rRNA/tRNA... 0.04 OrthoFinder
Cre03.g179860 30786956 RNA processing.RNA modification.rRNA/tRNA... 0.09 OrthoFinder
EOD09582 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.05 OrthoFinder
OT_04G00840.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.03 OrthoFinder
OT_13G01820.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.05 OrthoFinder
PTI_16G01630.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.07 OrthoFinder
PTI_17G01790.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.01 OrthoFinder
Sro2022_g311530.1 Contig3299.g25891 Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4a 0.02 OrthoFinder
Sro514_g158160.1 Contig3991.g30657 Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b 0.02 OrthoFinder
SymbC1.scaffold10744.1 10744.1 SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.02 OrthoFinder
TP03G01810.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.03 OrthoFinder
Vocar.0015s0322.1 32898844 SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.03 OrthoFinder
XM_002503226.1 MICPUN_59410, 59410 SAM-dependent methyltransferase RsmB/NOP2-type; CCT... 0.06 OrthoFinder
XM_002503368.1 MICPUN_59711, 59711 Ribosomal protein L34; SAM-dependent methyltransferase... 0.02 OrthoFinder
XM_003057672.1 MicpuC2_15736, 15736 SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.04 OrthoFinder
XM_003061244.1 MicpuC2_45780, 45780 SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.07 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32836.1_3709 PRW32836 TRNA (cytosine(34)-C(5))-methyltransferase 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004788 thiamine diphosphokinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008915 lipid-A-disaccharide synthase activity IEP Enrichment
BP GO:0009229 thiamine diphosphate biosynthetic process IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
MF GO:0030975 thiamine binding IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042357 thiamine diphosphate metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment

No InterPro domains available for this sequence

No external refs found!