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  5. Cz01g03260.t1

Cz01g03260.t1


Description : GNAT domain; Possible tRNA binding domain [Interproscan].


Gene families : OG_01_0002421 (OrthoFinder) Phylogenetic Tree(s): OG0002421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz01g03260.t1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cre03.g192850 30786830 RNA cytidine acetyltransferase 1 OS=Arabidopsis thaliana 0.2 OrthoFinder
Dusal.0097s00013.1 33203707 Possible tRNA binding domain; tRNA(Met) cytidine... 0.03 OrthoFinder
EOD28649 No alias tRNA(Met) cytidine acetyltransferase TmcA, N-terminal;... 0.05 OrthoFinder
EOD35490 No alias tRNA(Met) cytidine acetyltransferase TmcA, N-terminal;... 0.01 OrthoFinder
OT_05G03510.1 No alias GNAT domain; Helicase domain; tRNA(Met) cytidine... 0.07 OrthoFinder
PTI_10G02560.1 No alias tRNA(Met) cytidine acetyltransferase TmcA, N-terminal;... 0.18 OrthoFinder
Sro2015_g311050.1 Contig3461.g26850 RNA cytidine acetyltransferase 0.21 OrthoFinder
TP06G00170.1 No alias GNAT domain; Helicase domain; tRNA(Met) cytidine... 0.05 OrthoFinder
Transcript_contig_55440 55440 Helicase domain; tRNA(Met) cytidine acetyltransferase... 0.06 OrthoFinder
Vocar.0035s0085.1 32896835 Possible tRNA binding domain; tRNA(Met) cytidine... 0.05 OrthoFinder
XM_002508737.1 MICPUN_102725, 102725 Possible tRNA binding domain; tRNA(Met) cytidine... 0.05 OrthoFinder
XM_003056788.1 MicpuC2_56289, 56289 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal;... 0.07 OrthoFinder
lcl|BLLF01005750.1_cds_GFH31589.1_26066 HaLaN_30661, GFH31589 18S rRNA cytosine acetyltransferase 0.02 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57974.1_8452 PRW57974 N-acetyltransferase 10 0.15 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492217.1_5400 KAA8492217 RNA cytidine acetyltransferase 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008080 N-acetyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004531 deoxyribonuclease II activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006188 IMP biosynthetic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006450 regulation of translational fidelity IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016840 carbon-nitrogen lyase activity IEP Enrichment
MF GO:0016842 amidine-lyase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016889 endodeoxyribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046040 IMP metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000182 GNAT_dom 4 212
IPR027992 tRNA_bind_dom 222 446
No external refs found!