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  5. Transcript_contig_78893

Transcript_contig_78893 (78893)


Aliases : 78893

Description : ABC transporter type 1, transmembrane domain; ABC transporter-like [Interproscan].


Gene families : OG_01_0000039 (OrthoFinder) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78893
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000681.7 tig00000681_g3053.t1 ABC transporter C family member 1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00000718.3 tig00000718_g3679.t1 ABC transporter C family member 6 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00020592.4 tig00020592_g11633.t1 ABC transporter C family member 1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre17.g734612 30781956, MRP2 ABC transporter C family member 14 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz01g21260.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
Cz05g17060.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
EOD08599 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
EOD12783 No alias Putative ABC transporter [Ensembl]. 0.01 OrthoFinder
EOD34349 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
PTI_02G04530.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
PTI_10G02780.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
SymbC1.scaffold3934.5 3934.5 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
TP04G05700.1 No alias ABC transporter-like; ABC transporter type 1,... 0.03 OrthoFinder
XM_003058166.1 MicpuC2_15932, 15932 ATP-binding cassette superfamily 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 132 421
IPR003439 ABC_transporter-like_ATP-bd 535 682
No external refs found!