Transcript_contig_66361 (66361)

Aliases : 66361

Description : U3 small nucleolar RNA-associated protein 6 [Interproscan].

Gene families : OG_01_0002785 (OrthoFinder) Phylogenetic Tree(s): OG0002785_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Transcript_contig_66361
Cluster	HCCA: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000571.29	tig00000571_g2183.t1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder
Cre10.g442000	30790656	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder
Cz03g13170.t1	No alias	U3 small nucleolar RNA-associated protein 6 [Interproscan].	0.03	OrthoFinder
Dusal.0174s00015.1	33196283	U3 small nucleolar RNA-associated protein 6 [Interproscan].	0.01	OrthoFinder
EOD04628	No alias	U3 small nucleolar RNA-associated protein 6 [Interproscan].	0.04	OrthoFinder
PTI_08G02440.1	No alias	U3 small nucleolar RNA-associated protein 6 [Interproscan].	0.07	OrthoFinder
Sro757_g197930.1	Contig322.g4282	RNA-associated protein 6 homolog	0.06	OrthoFinder
TP16G00520.1	No alias	U3 small nucleolar RNA-associated protein 6 [Interproscan].	0.02	OrthoFinder
lcl\|BLLF01005177.1_cds_GFH30837.1_25314	HaLaN_29763, GFH30837	Hypothetical protein	0.02	OrthoFinder
lcl\|LHPG02000007.1_cds_PRW57423.1_9057	PRW57423	U3 small nucleolar RNA-associated 6-like protein	0.08	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499489.1_8442	KAA8499489	U3 small nucleolar RNA-associated protein 6	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0030490	maturation of SSU-rRNA	None	Extended
MF	GO:0030515	snoRNA binding	IEA	Interproscan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003937	IMP cyclohydrolase activity	IEP	Enrichment
MF	GO:0004643	phosphoribosylaminoimidazolecarboxamide formyltransferase activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
BP	GO:0006163	purine nucleotide metabolic process	IEP	Enrichment
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Enrichment
BP	GO:0006351	transcription, DNA-templated	IEP	Enrichment
MF	GO:0008080	N-acetyltransferase activity	IEP	Enrichment
MF	GO:0008324	cation transmembrane transporter activity	IEP	Enrichment
BP	GO:0009058	biosynthetic process	IEP	Enrichment
BP	GO:0009165	nucleotide biosynthetic process	IEP	Enrichment
MF	GO:0016407	acetyltransferase activity	IEP	Enrichment
MF	GO:0016410	N-acyltransferase activity	IEP	Enrichment
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Enrichment
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	Enrichment
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Enrichment
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Enrichment
BP	GO:0018130	heterocycle biosynthetic process	IEP	Enrichment
MF	GO:0019238	cyclohydrolase activity	IEP	Enrichment
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Enrichment
BP	GO:0032774	RNA biosynthetic process	IEP	Enrichment
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Enrichment
BP	GO:0044249	cellular biosynthetic process	IEP	Enrichment
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Enrichment
MF	GO:0046983	protein dimerization activity	IEP	Enrichment
BP	GO:0072521	purine-containing compound metabolic process	IEP	Enrichment
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Enrichment
BP	GO:0090407	organophosphate biosynthetic process	IEP	Enrichment
BP	GO:0097659	nucleic acid-templated transcription	IEP	Enrichment
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Enrichment
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Enrichment
BP	GO:1901576	organic substance biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR013949	Utp6	9	91

External Links

No external refs found!

Transcript_contig_66361 (66361)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation