Transcript_contig_65618 (65618)


Aliases : 65618

Description : DNA-directed RNA polymerase, RpoA/D/Rpb3-type [Interproscan].


Gene families : OG_01_0005985 (OrthoFinder) Phylogenetic Tree(s): OG0005985_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_65618
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
CzCPg01095.t1 No alias DNA-directed RNA polymerase, insert domain; DNA-directed... 0.06 OrthoFinder
Sro51_chlor_g029690.1 RpoA RpoA 0.04 OrthoFinder
SymbC1.scaffold482.6 482.6 RNA polymerase, alpha subunit, C-terminal; Ribosomal... 0.01 OrthoFinder
TPCG02680.1 No alias DNA-directed RNA polymerase, insert domain; DNA-directed... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004129 cytochrome-c oxidase activity IEP Enrichment
MF GO:0005044 scavenger receptor activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005576 extracellular region IEP Enrichment
CC GO:0005622 intracellular anatomical structure IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006091 generation of precursor metabolites and energy IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009060 aerobic respiration IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009579 thylakoid IEP Enrichment
BP GO:0009767 photosynthetic electron transport chain IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
BP GO:0015980 energy derivation by oxidation of organic compounds IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016168 chlorophyll binding IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Enrichment
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Enrichment
MF GO:0016977 chitosanase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019684 photosynthesis, light reaction IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0031647 regulation of protein stability IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
MF GO:0038024 cargo receptor activity IEP Enrichment
MF GO:0042301 phosphate ion binding IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Enrichment
BP GO:0045333 cellular respiration IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
BP GO:0050821 protein stabilization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3 31 54
No external refs found!