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  5. Cpa|evm.model.tig00000769.1

Cpa|evm.model.tig00000769.1 (tig00000769_g3997.t1)


Aliases : tig00000769_g3997.t1

Description : ABC transporter C family member 2 OS=Arabidopsis thaliana


Gene families : OG_01_0000039 (OrthoFinder) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000769.1
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
Cre04.g228650 30791460 Solute transport.primary active transport.ABC... 0.02 OrthoFinder
Cre13.g564900 30784450, MRP3 Solute transport.primary active transport.ABC... 0.03 OrthoFinder
Cre17.g734612 30781956, MRP2 ABC transporter C family member 14 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz05g17060.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
EOD08599 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
EOD33714 No alias ABC transporter type 1, transmembrane domain; ABC... 0.03 OrthoFinder
EOD41487 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
PTI_10G02780.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
Sro1322_g262550.1 Contig3764.g28905 Multiple drug resistance-associated protein-like transporter 1 0.01 OrthoFinder
Sro399_g134960.1 Contig279.g3623 Multiple drug resistance-associated protein-like transporter 1 0.01 OrthoFinder
Transcript_contig_55599 55599 ABC transporter type 1, transmembrane domain [Interproscan]. 0.01 OrthoFinder
XM_002508173.1 MICPUN_94915, 94915 ATP-binding cassette superfamily 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56046.1_9960 PRW56046 Multidrug resistance-associated 1 isoform X1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
MF GO:0008241 peptidyl-dipeptidase activity IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0018298 protein-chromophore linkage IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR041591 OCRE 389 435
IPR003439 ABC_transporter-like_ATP-bd 1386 1421
IPR000467 G_patch_dom 745 773
IPR001876 Znf_RanBP2 190 216
IPR011527 ABC1_TM_dom 1676 1759
IPR011527 ABC1_TM_dom 960 1162
IPR000504 RRM_dom 101 166
IPR000504 RRM_dom 240 298
No external refs found!