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  5. Transcript_contig_58058

Transcript_contig_58058 (58058)


Aliases : 58058

Description : PDZ domain 6; Tail specific protease [Interproscan].


Gene families : OG_01_0000478 (OrthoFinder) Phylogenetic Tree(s): OG0000478_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_58058
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000900.16 tig00000900_g5370.t1 Carboxyl-terminal-processing peptidase 2, chloroplastic... 0.03 OrthoFinder
Cpa|evm.model.tig00001532.11 tig00001532_g9277.t1 Carboxyl-terminal-processing peptidase 3, chloroplastic... 0.01 OrthoFinder
Dusal.0015s00042.1 33190938 Tail specific protease; PDZ domain 6 [Interproscan]. 0.01 OrthoFinder
Dusal.0111s00010.1 33199820 Tail specific protease; PDZ domain 6 [Interproscan]. 0.02 OrthoFinder
EOD24861 No alias Carboxyl-terminal processing protease [Ensembl]. 0.01 OrthoFinder
EOD41901 No alias Tail specific protease [Interproscan]. 0.02 OrthoFinder
OT_04G05210.1 No alias PDZ domain 6; Tail specific protease [Interproscan]. 0.02 OrthoFinder
Sro143_g066760.1 Contig3754.g28782 CtpA-like serine protease 0.03 OrthoFinder
XM_003063110.1 MicpuC2_22360, 22360 Tail specific protease [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01005111.1_cds_GFH30741.1_25218 HaLaN_29654, GFH30741 Carboxyl-terminal-processing peptidase chloroplastic isoform X1 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEA Interproscan
MF GO:0008236 serine-type peptidase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003856 3-dehydroquinate synthase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
CC GO:1905354 exoribonuclease complex IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR005151 Tail-specific_protease 368 500
IPR041489 PDZ_6 274 318
No external refs found!