Transcript_contig_57387 (57387)

Aliases : 57387

Description : E3 ubiquitin ligase, domain of unknown function DUF913; E3 ubiquitin ligase, domain of unknown function DUF908 [Interproscan].

Gene families : OG_01_0000372 (OrthoFinder) Phylogenetic Tree(s): OG0000372_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Transcript_contig_57387
Cluster	HCCA: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method
Cre01.g012450	30788678	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder
Cre12.g533750	30793184	E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana	0.01	OrthoFinder
Vocar.0045s0037.1	32887770	E3 ubiquitin ligase, domain of unknown function DUF913;...	0.02	OrthoFinder
lcl\|LHPG02000023.1_cds_PRW20575.1_5413	PRW20575	E3 ubiquitin-ligase HUWE1	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	Enrichment
MF	GO:0005215	transporter activity	IEP	Enrichment
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Enrichment
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Enrichment
CC	GO:0016021	integral component of membrane	IEP	Enrichment
CC	GO:0016592	mediator complex	IEP	Enrichment
MF	GO:0022857	transmembrane transporter activity	IEP	Enrichment
CC	GO:0031224	intrinsic component of membrane	IEP	Enrichment
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	Enrichment
BP	GO:0055085	transmembrane transport	IEP	Enrichment
MF	GO:0140110	transcription regulator activity	IEP	Enrichment
CC	GO:0140513	nuclear protein-containing complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR010314	E3_Ub_ligase_DUF913	470	830
IPR010309	E3_Ub_ligase_DUF908	123	407

External Links

No external refs found!