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  5. Transcript_contig_56407

Transcript_contig_56407 (56407)


Aliases : 56407

Description : Porphobilinogen deaminase, N-terminal; Porphobilinogen deaminase, C-terminal [Interproscan].


Gene families : OG_01_0001267 (OrthoFinder) Phylogenetic Tree(s): OG0001267_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56407
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.50 tig00000241_g20912.t1 Coenzyme metabolism.tetrapyrrol... 0.04 OrthoFinder
Cre16.g663900 30777054 Coenzyme metabolism.tetrapyrrol... 0.03 OrthoFinder
Cz03g22200.t1 No alias Porphobilinogen deaminase, C-terminal; Porphobilinogen... 0.05 OrthoFinder
Dusal.0145s00001.1 33195901 Porphobilinogen deaminase, N-terminal; Porphobilinogen... 0.04 OrthoFinder
EOD30502 No alias Porphobilinogen deaminase, N-terminal; Porphobilinogen... 0.02 OrthoFinder
OT_05G01260.1 No alias Porphobilinogen deaminase, N-terminal; Porphobilinogen... 0.03 OrthoFinder
PTI_06G02850.1 No alias Porphobilinogen deaminase, C-terminal; Porphobilinogen... 0.04 OrthoFinder
Sro10_g008400.1 Contig1.g64 Porphobilinogen deaminase 0.02 OrthoFinder
TP12G01000.1 No alias Porphobilinogen deaminase, C-terminal; Porphobilinogen... 0.03 OrthoFinder
Vocar.0041s0034.1 32888740 Porphobilinogen deaminase, C-terminal; Porphobilinogen... 0.01 OrthoFinder
XM_002507518.1 MICPUN_78011, 78011 Hydroxymethylbilane synthase (HMBS) 0.04 OrthoFinder
XM_003056504.1 MicpuC2_31842, 31842 Porphobilinogen deaminase, chloroplast precursor (HEMC) 0.04 OrthoFinder
lcl|BLLF01008196.1_cds_GFH33283.1_27760 HaLaN_32630, GFH33283 Hypothetical protein 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW60963.1_596 PRW60963 Porphobilinogen deaminase 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004418 hydroxymethylbilane synthase activity IEA Interproscan
BP GO:0033014 tetrapyrrole biosynthetic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
InterPro domains Description Start Stop
IPR022417 Porphobilin_deaminase_N 20 229
IPR022418 Porphobilinogen_deaminase_C 244 315
No external refs found!