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  5. Transcript_contig_56405

Transcript_contig_56405 (56405)


Aliases : 56405

Description : ABC transporter type 1, transmembrane domain; ABC transporter-like [Interproscan].


Gene families : OG_01_0000039 (OrthoFinder) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56405
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000681.7 tig00000681_g3053.t1 ABC transporter C family member 1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00000718.1 tig00000718_g3679.t1 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00000718.2 tig00000718_g3679.t1 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00001729.6 tig00001729_g9740.t1 Solute transport.primary active transport.ABC... 0.02 OrthoFinder
Cpa|evm.model.tig00020553.190 tig00020553_g10680.t1 ABC transporter C family member 4 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cpa|evm.model.tig00020553.191 tig00020553_g10681.t1 ABC transporter C family member 11 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00020592.4 tig00020592_g11633.t1 ABC transporter C family member 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre02.g097800 30785105 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre07.g325761 30775279 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre13.g564900 30784450, MRP3 Solute transport.primary active transport.ABC... 0.04 OrthoFinder
Cre17.g734612 30781956, MRP2 ABC transporter C family member 14 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cz05g17060.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
Dusal.0852s00004.1 33185428 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
EOD12092 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
EOD26066 No alias EF-hand domain; ABC transporter type 1, transmembrane... 0.01 OrthoFinder
EOD37777 No alias Multidrug resistance-associated protein, ABC superfamily... 0.02 OrthoFinder
EOD41487 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
PTI_03G04630.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
PTI_03G06590.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
Sro1659_g289240.1 Contig194.g2266 Oligomycin resistance ATP-dependent permease YOR1 0.01 OrthoFinder
Sro2938_g340630.1 Contig1091.g10559 Oligomycin resistance ATP-dependent permease YOR1 0.01 OrthoFinder
Sro399_g134960.1 Contig279.g3623 Multiple drug resistance-associated protein-like transporter 1 0.01 OrthoFinder
Sro61_g035030.1 Contig3112.g24756 Multiple drug resistance-associated protein-like transporter 1 0.01 OrthoFinder
Sro983_g227840.1 Contig79.g823 Multiple drug resistance-associated protein-like transporter 1 0.01 OrthoFinder
Vocar.0012s0088.1 32894879 ABC transporter-like; ABC transporter type 1,... 0.03 OrthoFinder
XM_002508173.1 MICPUN_94915, 94915 ATP-binding cassette superfamily 0.02 OrthoFinder
lcl|BLLF01003949.1_cds_GFH28596.1_23073 HaLaN_27113, GFH28596 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499894.1_8847 KAA8499894 Multidrug resistance-associated protein 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 568 701
IPR011527 ABC1_TM_dom 976 1206
IPR011527 ABC1_TM_dom 117 405
IPR003439 ABC_transporter-like_ATP-bd 1287 1435
No external refs found!