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  5. Transcript_contig_56160

Transcript_contig_56160 (56160)


Aliases : 56160

Description : Proteasome alpha-subunit, N-terminal domain; Proteasome, subunit alpha/beta [Interproscan].


Gene families : OG_01_0003856 (OrthoFinder) Phylogenetic Tree(s): OG0003856_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56160
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Cre14.g619550 30776161, POA7 Protein degradation.26S proteasome.20S core... 0.02 OrthoFinder
Cz03g23070.t1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.01 OrthoFinder
OT_10G03110.1 No alias Proteasome alpha-subunit, N-terminal domain; Proteasome,... 0.02 OrthoFinder
PTI_26G01000.1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.02 OrthoFinder
Sro1315_g262060.1 Contig2837.g22770 Proteasome subunit alpha type-3 (Fragment) 0.03 OrthoFinder
TP01G11230.1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.03 OrthoFinder
XM_003055523.1 MicpuC2_50364, 50364 Proteasome, subunit alpha/beta; Proteasome... 0.03 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59304.1_7323 PRW59304 20S proteasome alpha subunit G 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEA Interproscan
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
CC GO:0019773 proteasome core complex, alpha-subunit complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004618 phosphoglycerate kinase activity IEP Enrichment
MF GO:0004784 superoxide dismutase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
BP GO:0006650 glycerophospholipid metabolic process IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018196 peptidyl-asparagine modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0046486 glycerolipid metabolic process IEP Enrichment
BP GO:0046488 phosphatidylinositol metabolic process IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 32 214
IPR000426 Proteasome_asu_N 8 30
No external refs found!