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  5. Transcript_contig_55516

Transcript_contig_55516 (55516)


Aliases : 55516

Description : DNA-directed RNA polymerase, M/15kDa subunit [Interproscan].


Gene families : OG_01_0004165 (OrthoFinder) Phylogenetic Tree(s): OG0004165_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55516
Cluster HCCA: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000970.25 tig00000970_g5844.t1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.01 OrthoFinder
XM_002507205.1 MICPUN_51672, 51672 DNA-directed RNA polymerase, M/15kDa subunit; Zinc... 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004618 phosphoglycerate kinase activity IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006090 pyruvate metabolic process IEP Enrichment
BP GO:0006091 generation of precursor metabolites and energy IEP Enrichment
BP GO:0006096 glycolytic process IEP Enrichment
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
BP GO:0006757 ATP generation from ADP IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009132 nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0016052 carbohydrate catabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018196 peptidyl-asparagine modification IEP Enrichment
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
BP GO:0032787 monocarboxylic acid metabolic process IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0046031 ADP metabolic process IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Enrichment
BP GO:0046939 nucleotide phosphorylation IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0097526 spliceosomal tri-snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001529 DNA-dir_RNA_pol_M/15kDasu 10 45
No external refs found!