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  5. Transcript_contig_55320

Transcript_contig_55320 (55320)


Aliases : 55320

Description : UDPGP family [Interproscan].


Gene families : OG_01_0006422 (OrthoFinder) Phylogenetic Tree(s): OG0006422_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55320
Cluster HCCA: Cluster_244

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000202.10 tig00000202_g16618.t1 Lipid metabolism.galactolipid and sulfolipid... 0.01 OrthoFinder
Cre12.g554250 30793057, LPB1 Lipid metabolism.galactolipid and sulfolipid... 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56344.1_9953 PRW56344 Nucleotide-diphospho-sugar transferase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0070569 uridylyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR002618 UDPGP_fam 60 191
No external refs found!