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  5. Transcript_contig_53976

Transcript_contig_53976 (53976)


Aliases : 53976

Description : NodB homology domain [Interproscan].


Gene families : OG_01_0001088 (OrthoFinder) Phylogenetic Tree(s): OG0001088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_53976
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
Cre17.g698150 30782820 No description available 0.02 OrthoFinder
Transcript_contig_56031 56031 NodB homology domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_57626 57626 NodB homology domain [Interproscan]. 0.03 OrthoFinder
Transcript_contig_78124 78124 NodB homology domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61361.1_387 PRW61361 Left border a 0.09 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61372.1_25 PRW61372 Polysaccharide deacetylase 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61614.1_423 PRW61614 Chitin 0.05 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57450.1_9126 PRW57450 Chitin 0.03 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56282.1_10029 PRW56282 NodB homology domain [Interproscan]. 0.05 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39180.1_2682 PRW39180 NodB homology domain [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000028.1_cds_PRW05840.1_5994 PRW05840 NodB homology domain [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000444 MIS12/MIND type complex IEP Enrichment
CC GO:0000818 nuclear MIS12/MIND complex IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR002509 NODB_dom 90 177
No external refs found!