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  5. lcl|LHPG02000018.1_cds_PRW32901.1_3668

lcl|LHPG02000018.1_cds_PRW32901.1_3668 (PRW32901)


Aliases : PRW32901

Description : DNA-directed RNA polymerase chloroplastic mitochondrial


Gene families : OG_01_0004012 (OrthoFinder) Phylogenetic Tree(s): OG0004012_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000018.1_cds_PRW32901.1_3668
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021493.49 tig00021493_g21888.t1 RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder
Cz11g01070.t1 No alias DNA-directed RNA polymerase, N-terminal; DNA-directed... 0.05 OrthoFinder
OT_09G04050.1 No alias DNA-directed RNA polymerase, N-terminal; DNA-directed... 0.03 OrthoFinder
PTI_22G01800.1 No alias DNA-directed RNA polymerase, phage-type; DNA-directed... 0.13 OrthoFinder
Sro453_g146140.1 Contig1693.g15171 RNA polymerase 2, chloroplastic/mitochondrial 0.07 OrthoFinder
TP02G07610.1 No alias DNA-directed RNA polymerase, N-terminal; DNA-directed... 0.07 OrthoFinder
Transcript_contig_57975 57975 DNA-directed RNA polymerase, N-terminal [Interproscan]. 0.06 OrthoFinder
Vocar.0001s1539.1 32884920 DNA-directed RNA polymerase, N-terminal; DNA-directed... 0.08 OrthoFinder
XM_002503657.1 MICPUN_83775, 83775 DNA-directed RNA polymerase, phage-type; DNA-directed... 0.03 OrthoFinder
XM_003059239.1 MicpuC2_17826, 17826 DNA-directed RNA polymerase, phage-type; DNA-directed... 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499719.1_8672 KAA8499719 DNA-directed RNA polymerase 3, chloroplastic 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003852 2-isopropylmalate synthase activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004399 histidinol dehydrogenase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005516 calmodulin binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
MF GO:0005542 folic acid binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006551 leucine metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
BP GO:0009098 leucine biosynthetic process IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042255 ribosome assembly IEP Enrichment
BP GO:0042256 mature ribosome assembly IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
MF GO:0072341 modified amino acid binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR002092 DNA-dir_Rpol_phage-type 779 1117
IPR002092 DNA-dir_Rpol_phage-type 678 728
IPR029262 RPOL_N 147 540
No external refs found!